Variant report

Variant	nsv981364
Chromosome Location	chr6:79350042-79378171
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79366624..79368520-chr6:79370571..79372706,2	K562	blood:
2	chr6:79373515..79375551-chr6:79382981..79385975,2	MCF-7	breast:
3	chr6:79366624..79368520-chr6:79370571..79372706,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHIP-4	chr6:79370903-79371007	NONHSAT113671
2	lnc-PHIP-4	chr6:79372191-79372472	NONHSAT113671

Extended variants
information (count: 148 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:148 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35683036	chr6:79350069-79350070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs201268789	chr6:79350100-79350101	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs540176285	chr6:79350109-79350110	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs550454689	chr6:79350155-79350156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs529190106	chr6:79350165-79350166	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs62425668	chr6:79350221-79350222	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs74541192	chr6:79350229-79350230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs554380002	chr6:79350231-79350232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs141643572	chr6:79350271-79350272	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs574512287	chr6:79350276-79350277	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs373461149	chr6:79350295-79350296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs533631685	chr6:79350357-79350358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs553780112	chr6:79350376-79350377	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs376119938	chr6:79350402-79350403	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs576422598	chr6:79350417-79350418	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545703004	chr6:79350449-79350450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs193101184	chr6:79350458-79350459	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs147506400	chr6:79350474-79350475	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs542041584	chr6:79350480-79350481	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561711394	chr6:79350484-79350485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs527831267	chr6:79350489-79350490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs76005921	chr6:79350514-79350515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs536211911	chr6:79350525-79350526	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs183097234	chr6:79350560-79350561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs77237538	chr6:79350562-79350563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs186813752	chr6:79350623-79350624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs570327910	chr6:79350643-79350644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs76035219	chr6:79350672-79350673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs62425669	chr6:79350711-79350712	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs116709480	chr6:79350744-79350745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs7763429	chr6:79350769-79350770	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs7756442	chr6:79356227-79356228	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs566636862	chr6:79356243-79356244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs568657655	chr6:79356250-79356251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs34345701	chr6:79356267-79356268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs61145872	chr6:79356313-79356314	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs557305099	chr6:79356314-79356315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs150947759	chr6:79356337-79356338	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs543299707	chr6:79356346-79356347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs377120075	chr6:79356352-79356353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs9448517	chr6:79356370-79356371	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs62425700	chr6:79356378-79356379	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs62425701	chr6:79356395-79356396	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs563870723	chr6:79356435-79356436	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs376322559	chr6:79356436-79356437	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs371469940	chr6:79356444-79356445	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs72893289	chr6:79356481-79356482	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs62425702	chr6:79356496-79356497	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs62425703	chr6:79356513-79356514	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs188621861	chr6:79356522-79356523	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79349000-79350200	Enhancers	Duodenum Mucosa	Duodenum
2	chr6:79349200-79350200	Enhancers	Fetal Intestine Small	intestine
3	chr6:79350000-79350200	Enhancers	Fetal Intestine Large	intestine
4	chr6:79350000-79350600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr6:79350400-79350800	Enhancers	NHEK	skin
6	chr6:79356200-79356400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:79356400-79356600	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:79356400-79356800	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:79356400-79357000	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:79356400-79357000	Active TSS	A549	lung
11	chr6:79356400-79357200	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:79356400-79357200	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:79356400-79357400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:79356400-79357400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:79356400-79357400	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:79356600-79357000	Active TSS	H9 Cell Line	embryonic stem cell
17	chr6:79356600-79357200	Active TSS	Rectal Mucosa Donor 31	rectum
18	chr6:79356600-79357400	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:79356600-79357400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr6:79356800-79357400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:79357200-79357400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:79357200-79357400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
23	chr6:79357400-79357600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links