Variant report

Variant	rs62425700
Chromosome Location	chr6:79356378-79356379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11753268	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753781	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755496	1.00[ASN][1000 genomes]
rs11756825	0.94[EUR][1000 genomes]
rs12525083	1.00[ASN][1000 genomes]
rs1588044	1.00[ASN][1000 genomes]
rs1588045	1.00[ASN][1000 genomes]
rs17225876	1.00[ASN][1000 genomes]
rs17226851	1.00[ASN][1000 genomes]
rs17234902	0.94[EUR][1000 genomes]
rs17235062	0.94[EUR][1000 genomes]
rs17822220	1.00[ASN][1000 genomes]
rs17822917	1.00[ASN][1000 genomes]
rs17825291	1.00[ASN][1000 genomes]
rs2021251	1.00[ASN][1000 genomes]
rs2321449	1.00[ASN][1000 genomes]
rs35919105	1.00[ASN][1000 genomes]
rs62425666	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425667	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425668	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425669	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425696	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425701	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425702	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425703	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425704	0.96[AMR][1000 genomes]
rs62426783	0.94[EUR][1000 genomes]
rs62426788	0.94[EUR][1000 genomes]
rs62426820	0.94[EUR][1000 genomes]
rs6909051	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909644	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910018	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893289	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763418	1.00[ASN][1000 genomes]
rs7755324	1.00[ASN][1000 genomes]
rs959139	1.00[ASN][1000 genomes]
rs997649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv981364	chr6:79350042-79378171	Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79356200-79356400	Enhancers	HUES64 Cell Line	embryonic stem cell

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