Variant report
| Variant | rs35919105 |
|---|---|
| Chromosome Location | chr6:79339848-79339849 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11753268 | 1.00[ASN][1000 genomes] |
| rs11753781 | 1.00[ASN][1000 genomes] |
| rs11755496 | 1.00[ASN][1000 genomes] |
| rs12525083 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1588044 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1588045 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17225876 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17226851 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17822220 | 1.00[ASN][1000 genomes] |
| rs17822917 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17825291 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2021251 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2021855 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2321449 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62425666 | 1.00[ASN][1000 genomes] |
| rs62425667 | 1.00[ASN][1000 genomes] |
| rs62425668 | 1.00[ASN][1000 genomes] |
| rs62425669 | 1.00[ASN][1000 genomes] |
| rs62425696 | 1.00[ASN][1000 genomes] |
| rs62425700 | 1.00[ASN][1000 genomes] |
| rs62425701 | 1.00[ASN][1000 genomes] |
| rs62425702 | 1.00[ASN][1000 genomes] |
| rs62425703 | 1.00[ASN][1000 genomes] |
| rs6909051 | 1.00[ASN][1000 genomes] |
| rs6909644 | 1.00[ASN][1000 genomes] |
| rs6910018 | 1.00[ASN][1000 genomes] |
| rs72893289 | 1.00[ASN][1000 genomes] |
| rs73763418 | 1.00[ASN][1000 genomes] |
| rs7755324 | 1.00[ASN][1000 genomes] |
| rs959139 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs997649 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886235 | chr6:78861808-79369972 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv604011 | chr6:79042990-79455282 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886300 | chr6:79129963-79341891 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1028767 | chr6:79200713-79341224 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79339400-79341000 | Weak transcription | Right Atrium | heart |
| 2 | chr6:79339600-79345600 | Weak transcription | Fetal Brain Female | brain |
