Variant report

Variant	rs62425666
Chromosome Location	chr6:79349048-79349049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11753268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753781	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755479	0.83[AFR][1000 genomes]
rs11755496	1.00[ASN][1000 genomes]
rs11756825	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11757996	0.83[AFR][1000 genomes]
rs12525083	1.00[ASN][1000 genomes]
rs1588044	1.00[ASN][1000 genomes]
rs1588045	1.00[ASN][1000 genomes]
rs17225876	1.00[ASN][1000 genomes]
rs17226851	1.00[ASN][1000 genomes]
rs17234902	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17235062	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17235125	0.83[AFR][1000 genomes]
rs17235167	0.83[AFR][1000 genomes]
rs17235209	0.83[AFR][1000 genomes]
rs17822220	1.00[ASN][1000 genomes]
rs17822917	1.00[ASN][1000 genomes]
rs17825291	1.00[ASN][1000 genomes]
rs17826801	0.83[AFR][1000 genomes]
rs2021251	1.00[ASN][1000 genomes]
rs2321449	1.00[ASN][1000 genomes]
rs35919105	1.00[ASN][1000 genomes]
rs62425660	0.83[AFR][1000 genomes]
rs62425662	0.83[AFR][1000 genomes]
rs62425663	0.83[AFR][1000 genomes]
rs62425667	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425669	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425700	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425701	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425702	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425703	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425705	0.83[AFR][1000 genomes]
rs62426556	0.83[AFR][1000 genomes]
rs62426783	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62426788	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426820	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62427888	0.83[AFR][1000 genomes]
rs6909051	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909644	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910018	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893289	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763418	1.00[ASN][1000 genomes]
rs7755324	1.00[ASN][1000 genomes]
rs959139	1.00[ASN][1000 genomes]
rs997649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79349000-79349200	Enhancers	Fetal Intestine Large	intestine
2	chr6:79349000-79350200	Enhancers	Duodenum Mucosa	Duodenum

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