Variant report

Variant	rs17235062
Chromosome Location	chr6:79380109-79380110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11753268	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11753781	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11756825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235125	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235167	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235209	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826801	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425666	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62425667	0.94[EUR][1000 genomes]
rs62425668	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62425669	0.94[EUR][1000 genomes]
rs62425696	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62425700	0.94[EUR][1000 genomes]
rs62425701	0.96[EUR][1000 genomes]
rs62425702	0.92[EUR][1000 genomes]
rs62425703	0.87[EUR][1000 genomes]
rs62426783	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62426788	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62426820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909051	0.94[EUR][1000 genomes]
rs6909644	0.94[EUR][1000 genomes]
rs6910018	0.94[EUR][1000 genomes]
rs72893289	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79379000-79380800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:79379200-79380600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:79379200-79380800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:79379200-79380800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:79379200-79381400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:79379400-79380200	Enhancers	Brain Germinal Matrix	brain
7	chr6:79379400-79380800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:79379600-79380800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:79379800-79380800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links