Variant report

Variant	rs62426783
Chromosome Location	chr6:79370985-79370986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79366624..79368520-chr6:79370571..79372706,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHIP-4	chr6:79370903-79371007	NONHSAT113671

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11753268	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11753781	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755479	0.83[AFR][1000 genomes]
rs11756825	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757996	0.83[AFR][1000 genomes]
rs17234902	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235125	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235167	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235209	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826801	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425660	0.83[AFR][1000 genomes]
rs62425662	0.83[AFR][1000 genomes]
rs62425663	0.83[AFR][1000 genomes]
rs62425666	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62425667	0.96[EUR][1000 genomes]
rs62425668	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62425669	0.96[EUR][1000 genomes]
rs62425696	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62425700	0.94[EUR][1000 genomes]
rs62425701	0.99[EUR][1000 genomes]
rs62425702	0.95[EUR][1000 genomes]
rs62425703	0.90[EUR][1000 genomes]
rs62425705	0.83[AFR][1000 genomes]
rs62426556	0.83[AFR][1000 genomes]
rs62426788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62426820	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427888	0.83[AFR][1000 genomes]
rs6909051	0.96[EUR][1000 genomes]
rs6909644	0.96[EUR][1000 genomes]
rs6910018	0.96[EUR][1000 genomes]
rs72893289	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv981364	chr6:79350042-79378171	Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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