Variant report

Variant	rs62425704
Chromosome Location	chr6:79357168-79357169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11753781	0.81[AMR][1000 genomes]
rs60949818	1.00[ASN][1000 genomes]
rs62425667	0.86[AMR][1000 genomes]
rs62425669	0.86[AMR][1000 genomes]
rs62425700	0.96[AMR][1000 genomes]
rs62425701	0.86[AMR][1000 genomes]
rs62425702	0.86[AMR][1000 genomes]
rs62425703	0.83[AMR][1000 genomes]
rs6909051	0.86[AMR][1000 genomes]
rs6909644	0.86[AMR][1000 genomes]
rs6910018	0.86[AMR][1000 genomes]
rs72893289	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv981364	chr6:79350042-79378171	Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79356400-79357200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:79356400-79357200	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:79356400-79357400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:79356400-79357400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:79356400-79357400	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:79356600-79357200	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr6:79356600-79357400	Active TSS	Duodenum Mucosa	Duodenum
8	chr6:79356600-79357400	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr6:79356800-79357400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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