Variant report

Variant	nsv981554
Chromosome Location	chr7:98857837-98859015
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:98858922-98859026	HepG2	liver:	n/a	chr7:98858965-98858975 chr7:98858966-98858976
2	MYC	chr7:98857709-98857865	GM12878	blood:	n/a	n/a
3	POLR2A	chr7:98858108-98858307	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr7:98858856-98859213	K562	blood:	n/a	n/a
5	POLR2A	chr7:98857804-98857999	K562	blood:	n/a	n/a
6	RCOR1	chr7:98858194-98858248	HepG2	liver:	n/a	n/a
7	RCOR1	chr7:98858051-98858324	K562	blood:	n/a	n/a
8	RCOR1	chr7:98858046-98858390	K562	blood:	n/a	n/a
9	SPI1	chr7:98858681-98858835	K562	blood:	n/a	chr7:98858740-98858753 chr7:98858742-98858751 chr7:98858741-98858754
10	SPI1	chr7:98858654-98858964	HL-60	blood:	n/a	chr7:98858740-98858753 chr7:98858742-98858751 chr7:98858741-98858754
11	TBP	chr7:98858119-98858286	K562	blood:	n/a	n/a
12	USF1	chr7:98858890-98859036	HepG2	liver:	n/a	n/a
13	ZNF143	chr7:98858072-98858395	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:98858813..98861243-chr7:98863659..98865962,2	K562	blood:
2	chr7:98852401..98854849-chr7:98856529..98858154,2	MCF-7	breast:
3	chr7:98808174..98810651-chr7:98856542..98858905,3	MCF-7	breast:

Variant related genes	Relation type
MYH16	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191989513	chr7:98857848-98857849	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs567085949	chr7:98857861-98857862	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs527978463	chr7:98857874-98857875	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs61742332	chr7:98857884-98857885	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs567799705	chr7:98857897-98857898	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs142091146	chr7:98857898-98857899	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs557058827	chr7:98857905-98857906	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs182608295	chr7:98857958-98857959	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs539465176	chr7:98857979-98857980	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs7792178	chr7:98857986-98857987	Weak transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs10278443	chr7:98857995-98857996	Weak transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs146326753	chr7:98858013-98858014	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs118040183	chr7:98858074-98858075	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs114631762	chr7:98858075-98858076	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs57260955	chr7:98858100-98858101	Weak transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs562672060	chr7:98858161-98858162	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs11769698	chr7:98858167-98858168	Weak transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs138441973	chr7:98858201-98858202	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs547351809	chr7:98858209-98858210	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs560536387	chr7:98858237-98858238	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs186810793	chr7:98858259-98858260	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs142974223	chr7:98858322-98858323	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs207468331	chr7:98858335-98858336	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs561481785	chr7:98858408-98858409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144323334	chr7:98858416-98858417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs191632620	chr7:98858444-98858445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs569004223	chr7:98858504-98858505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571225558	chr7:98858507-98858508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs182641976	chr7:98858513-98858514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs551510024	chr7:98858552-98858553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs551134921	chr7:98858559-98858560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs187099242	chr7:98858614-98858615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs533861482	chr7:98858639-98858640	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs555611573	chr7:98858668-98858669	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs148797984	chr7:98858698-98858699	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs370230570	chr7:98858709-98858710	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs368622844	chr7:98858719-98858720	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs550601669	chr7:98858740-98858741	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs12535654	chr7:98858784-98858785	Weak transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs6964174	chr7:98858811-98858812	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs545438706	chr7:98858816-98858817	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs560294936	chr7:98858854-98858855	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs572370083	chr7:98858897-98858898	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs542971926	chr7:98858971-98858972	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164920	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Breast cancer	21509527	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98853400-98859000	Weak transcription	Esophagus	oesophagus
2	chr7:98853400-98864600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:98853600-98863200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:98853600-98864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:98857200-98860000	Weak transcription	Right Atrium	heart
6	chr7:98857800-98858200	Enhancers	Pancreas	Pancrea
7	chr7:98858200-98858600	Weak transcription	Pancreas	Pancrea
8	chr7:98858600-98860200	Enhancers	Pancreas	Pancrea
9	chr7:98858800-98859600	Enhancers	Stomach Mucosa	stomach
10	chr7:98859000-98859200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:98859000-98859600	Enhancers	Esophagus	oesophagus

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