Variant report

Variant	rs11769698
Chromosome Location	chr7:98858167-98858168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10274646	0.92[CEU][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap]
rs10953286	0.83[GIH][hapmap];0.95[MEX][hapmap]
rs11976919	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28608208	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4236542	0.83[EUR][1000 genomes]
rs4623337	0.80[EUR][1000 genomes]
rs4729523	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6465747	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966842	0.81[EUR][1000 genomes]
rs7792178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798877	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv981554	chr7:98857837-98859015	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11769698	TAC1	cis	parietal	SCAN
rs11769698	CYP3A7	cis	parietal	SCAN
rs11769698	GATS	cis	parietal	SCAN
rs11769698	CPSF4	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98853400-98859000	Weak transcription	Esophagus	oesophagus
2	chr7:98853400-98864600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:98853600-98863200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:98853600-98864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:98857200-98860000	Weak transcription	Right Atrium	heart
6	chr7:98857800-98858200	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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