Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10155966	0.88[GIH][hapmap];1.00[YRI][hapmap]
rs10243678	0.88[GIH][hapmap];1.00[YRI][hapmap]
rs10258757	0.91[GIH][hapmap];1.00[YRI][hapmap]
rs10270459	1.00[YRI][hapmap]
rs10270917	0.91[GIH][hapmap];1.00[YRI][hapmap]
rs10272998	0.82[ASW][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs10274646	0.82[MEX][hapmap]
rs11762273	0.91[GIH][hapmap];1.00[YRI][hapmap]
rs11769698	0.83[GIH][hapmap];0.95[MEX][hapmap]
rs11972017	0.82[LWK][hapmap];0.83[MKK][hapmap]
rs17161652	0.81[CHB][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap]
rs17161677	0.89[JPT][hapmap]
rs17161692	0.95[JPT][hapmap]
rs2072181	0.88[GIH][hapmap]
rs2074652	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2286162	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2301889	0.95[JPT][hapmap]
rs28608208	0.82[ASN][1000 genomes]
rs3801288	0.94[GIH][hapmap];0.94[JPT][hapmap]
rs6943920	1.00[YRI][hapmap]
rs886620	0.93[ASN][1000 genomes]
rs9969217	0.82[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98881200-98899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:98885800-98891400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:98887200-98889800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:98887200-98889800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:98887400-98888000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:98887400-98888600	Weak transcription	Stomach Mucosa	stomach

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