Variant report

Variant	rs10274646
Chromosome Location	chr7:98834127-98834128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10261416	0.97[ASN][1000 genomes]
rs10953286	0.82[MEX][hapmap]
rs11769698	0.92[CEU][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap]
rs12705056	0.97[ASN][1000 genomes]
rs4236541	0.96[ASN][1000 genomes]
rs4236542	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4623337	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4624956	0.97[ASN][1000 genomes]
rs4729523	0.92[CEU][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs6966842	0.88[ASN][1000 genomes]
rs6969297	0.93[ASN][1000 genomes]
rs6969440	0.93[ASN][1000 genomes]
rs7792178	0.92[CEU][hapmap]
rs7797978	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10274646	CYP3A7	cis	parietal	SCAN
rs10274646	TAC1	cis	parietal	SCAN
rs10274646	GATS	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98823800-98849600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98827400-98842000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:98833600-98834200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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