Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10272998	0.85[JPT][hapmap]
rs10953286	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs12334007	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12530653	0.92[AFR][1000 genomes]
rs17161652	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17161677	1.00[JPT][hapmap]
rs17161692	0.85[JPT][hapmap]
rs17161698	0.83[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2269985	0.83[JPT][hapmap];1.00[YRI][hapmap]
rs2286162	0.85[JPT][hapmap]
rs2301889	0.85[JPT][hapmap]
rs35136475	0.85[AMR][1000 genomes]
rs3764815	0.83[JPT][hapmap]
rs3801288	0.84[JPT][hapmap]
rs4236543	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4320484	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4412306	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58421977	0.83[ASN][1000 genomes]
rs58999322	0.81[ASN][1000 genomes]
rs6465745	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7799650	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs886620	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98875200-98886800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:98878000-98885600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:98880600-98883800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:98881200-98881400	Enhancers	Gastric	stomach
9	chr7:98881200-98899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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