Variant report

Variant	rs7798877
Chromosome Location	chr7:98816693-98816694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98760252..98762397-chr7:98816218..98818322,2	MCF-7	breast:
2	chr7:98807183..98812417-chr7:98813436..98818450,10	MCF-7	breast:
3	chr7:98740663..98743430-chr7:98816685..98821148,3	MCF-7	breast:
4	chr7:98740809..98742984-chr7:98815665..98818080,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10499949	0.85[CHD][hapmap]
rs11769698	0.83[CEU][hapmap]
rs12673754	0.82[ASN][1000 genomes]
rs12705036	0.85[CHD][hapmap]
rs12705040	0.82[ASN][1000 genomes]
rs12705041	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12705042	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12705043	0.89[ASN][1000 genomes]
rs12705044	0.89[ASN][1000 genomes]
rs12705045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12705046	0.89[ASN][1000 genomes]
rs12705047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12705048	0.89[ASN][1000 genomes]
rs12705049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12705050	0.89[ASN][1000 genomes]
rs12705051	0.89[ASN][1000 genomes]
rs12705052	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12705054	0.89[ASN][1000 genomes]
rs13239596	0.85[CHD][hapmap]
rs13242894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13309003	0.89[ASN][1000 genomes]
rs13310182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13310534	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17161617	0.85[CHD][hapmap]
rs17161618	0.82[CHD][hapmap]
rs17161622	0.85[CHD][hapmap]
rs34482096	0.89[ASN][1000 genomes]
rs34617837	0.89[ASN][1000 genomes]
rs34988009	0.89[ASN][1000 genomes]
rs35244406	0.89[ASN][1000 genomes]
rs35397579	0.89[ASN][1000 genomes]
rs4729523	0.83[CEU][hapmap]
rs6960805	0.81[MEX][hapmap]
rs71567533	0.83[ASN][1000 genomes]
rs71567534	0.89[ASN][1000 genomes]
rs71567535	0.89[ASN][1000 genomes]
rs71567536	0.89[ASN][1000 genomes]
rs7787830	0.85[CHD][hapmap]
rs7788790	0.85[CHD][hapmap]
rs7792178	0.83[CEU][hapmap]
rs7793425	0.85[CHD][hapmap]
rs7809188	0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98811000-98827600	Weak transcription	Right Atrium	heart
3	chr7:98814000-98817400	Enhancers	Stomach Mucosa	stomach
4	chr7:98815000-98816800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:98815600-98816800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:98815800-98816800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:98816000-98816800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr7:98816000-98816800	Flanking Bivalent TSS/Enh	HepG2	liver
9	chr7:98816000-98817200	Enhancers	Fetal Intestine Small	intestine
10	chr7:98816000-98817200	Enhancers	A549	lung
11	chr7:98816000-98817400	Enhancers	Fetal Intestine Large	intestine
12	chr7:98816200-98816800	Enhancers	Gastric	stomach
13	chr7:98816200-98817400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr7:98816400-98816800	Enhancers	Fetal Thymus	thymus
15	chr7:98816400-98817400	Enhancers	Primary T cells from cord blood	blood
16	chr7:98816600-98822000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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