Variant report

Variant	rs13310182
Chromosome Location	chr7:98809567-98809568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr7:98809281-98809899	A549	lung:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
2	FOXA1	chr7:98809312-98809892	HepG2	liver:	n/a	n/a
3	CEBPB	chr7:98809148-98809655	Hela-S3	cervix:	n/a	n/a
4	EP300	chr7:98809225-98809702	HepG2	liver:	n/a	chr7:98809578-98809587
5	POLR2A	chr7:98809252-98809793	MCF10A-Er-Src	breast:	n/a	n/a
6	ZNF217	chr7:98809324-98809746	MCF-7	breast:	n/a	n/a
7	TEAD4	chr7:98809242-98809842	HepG2	liver:	n/a	n/a
8	MAFF	chr7:98809218-98809742	HepG2	liver:	n/a	n/a
9	POLR2A	chr7:98809544-98809743	HepG2	liver:	n/a	n/a
10	MAFK	chr7:98809436-98809835	HepG2	liver:	n/a	n/a
11	POLR2A	chr7:98807413-98810111	MCF10A-Er-Src	breast:	n/a	n/a
12	FOXA2	chr7:98809305-98809848	A549	lung:	n/a	n/a
13	TBP	chr7:98809176-98809883	HepG2	liver:	n/a	n/a
14	POLR2A	chr7:98809245-98809754	Hela-S3	cervix:	n/a	n/a
15	RAD21	chr7:98809240-98809810	HepG2	liver:	n/a	n/a
16	ARID3A	chr7:98809205-98809859	HepG2	liver:	n/a	n/a
17	FOSL2	chr7:98809146-98809840	MCF-7	breast:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
18	RFX5	chr7:98809383-98809807	HepG2	liver:	n/a	chr7:98809740-98809749
19	MAX	chr7:98808970-98809941	A549	lung:	n/a	n/a
20	SP1	chr7:98809267-98809974	HepG2	liver:	n/a	chr7:98809765-98809778
21	MAX	chr7:98809227-98809927	A549	lung:	n/a	n/a
22	FOS	chr7:98809350-98809757	MCF10A-Er-Src	breast:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
23	MAX	chr7:98809145-98809806	HepG2	liver:	n/a	n/a
24	HNF4A	chr7:98809479-98809837	HepG2	liver:	n/a	chr7:98809629-98809644
25	FOS	chr7:98809352-98809772	MCF10A-Er-Src	breast:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
26	FOXA2	chr7:98809115-98809949	HepG2	liver:	n/a	n/a
27	POLR2A	chr7:98809523-98809715	A549	lung:	n/a	n/a
28	STAT3	chr7:98809270-98809797	MCF10A-Er-Src	breast:	n/a	chr7:98809480-98809491 chr7:98809771-98809783 chr7:98809482-98809491 chr7:98809481-98809490 chr7:98809479-98809493
29	CEBPZ	chr7:98809343-98809815	HepG2	liver:	n/a	n/a
30	EP300	chr7:98809276-98809837	HepG2	liver:	n/a	chr7:98809578-98809587
31	NFIC	chr7:98809122-98809831	HepG2	liver:	n/a	n/a
32	POLR2A	chr7:98809239-98809638	HCT-116	colon:	n/a	n/a
33	MYBL2	chr7:98809118-98810021	HepG2	liver:	n/a	n/a
34	MYC	chr7:98809372-98809710	MCF10A-Er-Src	breast:	n/a	n/a
35	RXRA	chr7:98809363-98809786	HepG2	liver:	n/a	chr7:98809579-98809598 chr7:98809590-98809606
36	POLR2A	chr7:98809179-98809899	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr7:98809200-98809675	ECC-1	luminal epithelium:	n/a	n/a
38	MAX	chr7:98809160-98809761	A549	lung:	n/a	n/a
39	CEBPB	chr7:98809308-98809690	HepG2	liver:	n/a	n/a
40	MXI1	chr7:98809230-98809877	HepG2	liver:	n/a	n/a
41	USF2	chr7:98809164-98809725	Hela-S3	cervix:	n/a	n/a
42	JUN	chr7:98809416-98809799	HepG2	liver:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
43	FOS	chr7:98809377-98809719	MCF10A-Er-Src	breast:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
44	CEBPB	chr7:98809382-98809628	HepG2	liver:	n/a	n/a
45	FOSL2	chr7:98809166-98809948	A549	lung:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
46	FOXA2	chr7:98809252-98809793	HepG2	liver:	n/a	n/a
47	FOS	chr7:98809393-98809752	MCF10A-Er-Src	breast:	n/a	chr7:98809578-98809587 chr7:98809580-98809587
48	POLR2A	chr7:98809053-98809938	HepG2	liver:	n/a	n/a
49	POLR2A	chr7:98809133-98809834	HepG2	liver:	n/a	n/a
50	SP1	chr7:98809091-98810022	A549	lung:	n/a	chr7:98809765-98809778

No.	Distal block	Cell Line	Cell type
1	chr7:98758729..98762342-chr7:98808089..98809747,3	MCF-7	breast:
2	chr7:98807183..98812417-chr7:98813436..98818450,10	MCF-7	breast:
3	chr7:98807265..98810785-chr7:98821071..98827725,5	MCF-7	breast:
4	chr7:98702195..98704241-chr7:98806871..98809621,2	MCF-7	breast:
5	chr7:98679090..98681907-chr7:98808014..98810256,2	MCF-7	breast:
6	chr7:98797515..98801446-chr7:98806232..98810784,4	MCF-7	breast:
7	chr7:98807837..98811719-chr7:98828623..98830666,3	MCF-7	breast:
8	chr7:98694785..98697794-chr7:98808193..98811176,3	MCF-7	breast:
9	chr7:98762592..98764850-chr7:98807943..98809582,2	MCF-7	breast:
10	chr12:7052866..7053675-chr7:98809226..98809919,2	HCT-116	colon:
11	chr7:98738526..98746153-chr7:98804876..98809686,18	MCF-7	breast:
12	chr7:98808636..98811320-chr7:98812026..98815181,4	MCF-7	breast:
13	chr7:98807843..98809841-chr7:98921913..98924740,2	MCF-7	breast:
14	chr7:98803072..98806068-chr7:98806546..98809669,4	MCF-7	breast:
15	chr7:98740103..98745000-chr7:98806658..98810214,11	MCF-7	breast:
16	chr7:98808174..98810651-chr7:98856542..98858905,3	MCF-7	breast:

Variant related genes	Relation type
KPNA7	TF binding region
ENSG00000238923	Chromatin interaction
ENSG00000185467	Chromatin interaction
ENSG00000198742	Chromatin interaction
ENSG00000241685	Chromatin interaction
ENSG00000111678	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10499949	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs12673754	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705032	0.88[AMR][1000 genomes]
rs12705033	0.91[AMR][1000 genomes]
rs12705034	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs12705035	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs12705036	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs12705038	0.91[AMR][1000 genomes]
rs12705039	0.91[AMR][1000 genomes]
rs12705040	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705043	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705044	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705046	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705048	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705050	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705051	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705052	1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705054	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13221427	0.91[AMR][1000 genomes]
rs13224433	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs13236786	0.91[AMR][1000 genomes]
rs13236896	0.91[AMR][1000 genomes]
rs13237093	0.91[AMR][1000 genomes]
rs13238146	0.86[AMR][1000 genomes]
rs13239506	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs13239596	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs13242894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244043	0.88[AMR][1000 genomes]
rs13244327	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs13244579	0.91[AMR][1000 genomes]
rs13244583	0.91[AMR][1000 genomes]
rs13244592	0.91[AMR][1000 genomes]
rs13247718	0.91[AMR][1000 genomes]
rs13247877	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs13309003	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13310534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867592	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs17161611	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs17161615	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs17161617	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs17161618	1.00[CEU][hapmap]
rs17161622	1.00[CEU][hapmap]
rs34088480	0.91[AMR][1000 genomes]
rs34221671	0.91[AMR][1000 genomes]
rs34250243	0.91[AMR][1000 genomes]
rs34350957	0.91[AMR][1000 genomes]
rs34482096	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617837	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34715870	0.91[AMR][1000 genomes]
rs34724557	0.91[AMR][1000 genomes]
rs34929886	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34988009	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244406	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312766	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35397579	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35511099	0.91[AMR][1000 genomes]
rs35597916	0.91[AMR][1000 genomes]
rs35611495	0.83[AMR][1000 genomes]
rs35615419	0.91[AMR][1000 genomes]
rs61749907	0.91[AMR][1000 genomes]
rs66785725	0.91[AMR][1000 genomes]
rs66931650	0.81[AMR][1000 genomes]
rs67422346	0.81[AMR][1000 genomes]
rs67723713	0.91[AMR][1000 genomes]
rs67749476	0.91[AMR][1000 genomes]
rs68076840	0.91[AMR][1000 genomes]
rs71567531	0.91[AMR][1000 genomes]
rs71567533	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71567534	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71567535	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71567536	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401379	0.91[AMR][1000 genomes]
rs73401390	0.88[AMR][1000 genomes]
rs73403103	0.91[AMR][1000 genomes]
rs73403107	0.88[AMR][1000 genomes]
rs7778995	0.91[AMR][1000 genomes]
rs7779268	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7779342	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7783606	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7783618	0.91[AMR][1000 genomes]
rs7787830	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs7788790	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7789312	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7793425	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7793510	0.91[AMR][1000 genomes]
rs7798877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7805070	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7806230	0.91[AMR][1000 genomes]
rs7808942	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs7809188	1.00[CEU][hapmap];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98804800-98809600	Enhancers	Fetal Intestine Small	intestine
3	chr7:98805000-98811400	Enhancers	Fetal Intestine Large	intestine
4	chr7:98805400-98809800	Enhancers	Placenta	Placenta
5	chr7:98805400-98811400	Enhancers	Pancreas	Pancrea
6	chr7:98806400-98809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:98807400-98809800	Enhancers	HMEC	breast
8	chr7:98807600-98809600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:98807600-98809600	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:98807600-98809800	Enhancers	NHEK	skin
11	chr7:98807600-98810000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:98808400-98811600	Enhancers	Stomach Mucosa	stomach
13	chr7:98809000-98809800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:98809000-98809800	Flanking Active TSS	A549	lung
15	chr7:98809200-98809600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:98809200-98809600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:98809200-98809600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:98809200-98809600	Bivalent Enhancer	K562	blood
19	chr7:98809200-98809800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:98809200-98809800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:98809200-98809800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:98809200-98809800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:98809200-98809800	Flanking Active TSS	Hela-S3	cervix
24	chr7:98809200-98809800	Enhancers	NH-A	brain
25	chr7:98809400-98809600	Enhancers	Liver	Liver
26	chr7:98809400-98809600	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr7:98809400-98809800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:98809400-98809800	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr7:98809400-98810000	Active TSS	HepG2	liver

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