Variant report

Variant	rs12705040
Chromosome Location	chr7:98804846-98804847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12673754	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705041	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705042	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705043	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705044	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705045	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705046	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705047	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705048	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705049	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705050	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705051	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705052	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705054	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13242894	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13309003	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13310182	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13310534	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34482096	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34617837	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34929886	0.95[EUR][1000 genomes]
rs34988009	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35244406	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35312766	0.81[EUR][1000 genomes]
rs35397579	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71567533	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71567534	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71567535	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71567536	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7798877	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98801400-98807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:98802000-98805600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:98802600-98805600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:98803600-98805400	Enhancers	HepG2	liver
6	chr7:98803600-98807800	Enhancers	Stomach Mucosa	stomach
7	chr7:98804200-98805400	Enhancers	A549	lung
8	chr7:98804400-98807800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:98804600-98805600	Enhancers	Hela-S3	cervix
10	chr7:98804800-98805000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr7:98804800-98805200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr7:98804800-98809600	Enhancers	Fetal Intestine Small	intestine

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