Variant report

Variant	rs34988009
Chromosome Location	chr7:98807852-98807853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:54)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:54 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:98807648-98808637	A549	lung:	n/a	chr7:98808125-98808138
2	MYBL2	chr7:98807732-98808514	HepG2	liver:	n/a	n/a
3	EP300	chr7:98807703-98808499	A549	lung:	n/a	chr7:98808125-98808138
4	NR3C1	chr7:98807617-98808233	A549	lung:	n/a	n/a
5	GATA3	chr7:98807635-98808507	A549	lung:	n/a	n/a
6	ZBTB33	chr7:98807743-98808204	A549	lung:	n/a	n/a
7	SMC3	chr7:98807842-98808222	HepG2	liver:	n/a	n/a
8	CEBPB	chr7:98807830-98808250	HepG2	liver:	n/a	chr7:98808057-98808070
9	CEBPB	chr7:98807441-98808255	HepG2	liver:	n/a	chr7:98808057-98808070
10	POLR2A	chr7:98807413-98810111	MCF10A-Er-Src	breast:	n/a	n/a
11	NR3C1	chr7:98807620-98808310	A549	lung:	n/a	n/a
12	NR3C1	chr7:98807617-98808311	A549	lung:	n/a	n/a
13	FOXA2	chr7:98807842-98808401	A549	lung:	n/a	n/a
14	REST	chr7:98807634-98808347	A549	lung:	n/a	n/a
15	FOXA1	chr7:98807785-98808341	HepG2	liver:	n/a	n/a
16	FOXA2	chr7:98807824-98808281	HepG2	liver:	n/a	n/a
17	NR3C1	chr7:98807482-98808369	A549	lung:	n/a	n/a
18	FOSL2	chr7:98807327-98808654	A549	lung:	n/a	n/a
19	FOXA2	chr7:98807426-98808382	A549	lung:	n/a	n/a
20	NR3C1	chr7:98807686-98807908	A549	lung:	n/a	n/a
21	EP300	chr7:98807809-98808297	HepG2	liver:	n/a	chr7:98808125-98808138
22	GABPA	chr7:98807824-98808297	A549	lung:	n/a	n/a
23	NR3C1	chr7:98807482-98808367	A549	lung:	n/a	n/a
24	MAX	chr7:98807817-98808372	A549	lung:	n/a	chr7:98808017-98808026
25	FOXA1	chr7:98807687-98808394	HepG2	liver:	n/a	n/a
26	HNF4G	chr7:98807846-98808176	HepG2	liver:	n/a	n/a
27	SP1	chr7:98807636-98808563	A549	lung:	n/a	n/a
28	CEBPB	chr7:98807408-98808484	A549	lung:	n/a	chr7:98808057-98808070
29	USF1	chr7:98807828-98808463	A549	lung:	n/a	n/a
30	TBP	chr7:98807799-98808173	HepG2	liver:	n/a	n/a
31	NFIC	chr7:98807759-98808236	HepG2	liver:	n/a	n/a
32	TCF12	chr7:98807503-98808601	A549	lung:	n/a	n/a
33	ELF1	chr7:98807833-98808196	A549	lung:	n/a	n/a
34	FOXA1	chr7:98807443-98808328	HepG2	liver:	n/a	n/a
35	RAD21	chr7:98807671-98808349	A549	lung:	n/a	n/a
36	ARID3A	chr7:98807820-98808393	HepG2	liver:	n/a	n/a
37	CEBPB	chr7:98807332-98808434	A549	lung:	n/a	chr7:98808057-98808070
38	MBD4	chr7:98807838-98808292	HepG2	liver:	n/a	n/a
39	CEBPB	chr7:98807342-98808324	MCF-7	breast:	n/a	chr7:98808057-98808070
40	MAX	chr7:98807756-98808414	A549	lung:	n/a	chr7:98808017-98808026
41	SP1	chr7:98807483-98808466	A549	lung:	n/a	n/a
42	BCL3	chr7:98807756-98808370	A549	lung:	n/a	n/a
43	USF1	chr7:98807824-98808196	A549	lung:	n/a	n/a
44	SPI1	chr7:98807807-98808178	HL-60	blood:	n/a	chr7:98807995-98808008 chr7:98807998-98808005
45	TCF7L2	chr7:98807714-98808030	Hela-S3	cervix:	n/a	n/a
46	MYBL2	chr7:98807796-98808308	HepG2	liver:	n/a	n/a
47	TEAD4	chr7:98807774-98808334	HepG2	liver:	n/a	n/a
48	CEBPB	chr7:98807791-98808342	A549	lung:	n/a	chr7:98808057-98808070
49	POLR2A	chr7:98807825-98808292	Hela-S3	cervix:	n/a	n/a
50	CEBPB	chr7:98807471-98808311	Hela-S3	cervix:	n/a	chr7:98808057-98808070

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98721425..98723767-chr7:98806465..98809403,2	MCF-7	breast:
2	chr7:98807183..98812417-chr7:98813436..98818450,10	MCF-7	breast:
3	chr7:98807265..98810785-chr7:98821071..98827725,5	MCF-7	breast:
4	chr7:98702195..98704241-chr7:98806871..98809621,2	MCF-7	breast:
5	chr7:98806915..98808427-chr7:98826537..98828896,2	MCF-7	breast:
6	chr7:98797515..98801446-chr7:98806232..98810784,4	MCF-7	breast:
7	chr7:98807837..98811719-chr7:98828623..98830666,3	MCF-7	breast:
8	chr7:98738526..98746153-chr7:98804876..98809686,18	MCF-7	breast:
9	chr7:98807843..98809841-chr7:98921913..98924740,2	MCF-7	breast:
10	chr7:98807571..98809219-chr7:98875910..98878236,2	MCF-7	breast:
11	chr7:98803072..98806068-chr7:98806546..98809669,4	MCF-7	breast:
12	chr7:98740103..98745000-chr7:98806658..98810214,11	MCF-7	breast:

No data

Variant related genes	Relation type
KPNA7	TF binding region
ENSG00000198742	Chromatin interaction
ENSG00000185467	Chromatin interaction
ENSG00000241685	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10499949	0.86[AMR][1000 genomes]
rs12673754	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705032	0.83[AMR][1000 genomes]
rs12705033	0.86[AMR][1000 genomes]
rs12705034	0.86[AMR][1000 genomes]
rs12705035	0.86[AMR][1000 genomes]
rs12705036	0.86[AMR][1000 genomes]
rs12705038	0.86[AMR][1000 genomes]
rs12705039	0.86[AMR][1000 genomes]
rs12705040	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705041	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705042	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705044	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705046	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705050	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13221427	0.86[AMR][1000 genomes]
rs13224433	0.83[AMR][1000 genomes]
rs13236786	0.86[AMR][1000 genomes]
rs13236896	0.86[AMR][1000 genomes]
rs13237093	0.86[AMR][1000 genomes]
rs13238146	0.81[AMR][1000 genomes]
rs13239506	0.86[AMR][1000 genomes]
rs13239596	0.86[AMR][1000 genomes]
rs13242894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244043	0.83[AMR][1000 genomes]
rs13244579	0.86[AMR][1000 genomes]
rs13244583	0.86[AMR][1000 genomes]
rs13244592	0.86[AMR][1000 genomes]
rs13247718	0.86[AMR][1000 genomes]
rs13247877	0.86[AMR][1000 genomes]
rs13309003	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13310182	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13310534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867592	0.83[AMR][1000 genomes]
rs17161611	0.86[AMR][1000 genomes]
rs17161615	0.86[AMR][1000 genomes]
rs17161617	0.86[AMR][1000 genomes]
rs34088480	0.86[AMR][1000 genomes]
rs34221671	0.86[AMR][1000 genomes]
rs34250243	0.86[AMR][1000 genomes]
rs34350957	0.86[AMR][1000 genomes]
rs34482096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34715870	0.86[AMR][1000 genomes]
rs34724557	0.86[AMR][1000 genomes]
rs34929886	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35244406	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312766	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35397579	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35511099	0.86[AMR][1000 genomes]
rs35597916	0.86[AMR][1000 genomes]
rs35615419	0.86[AMR][1000 genomes]
rs61749907	0.86[AMR][1000 genomes]
rs66785725	0.86[AMR][1000 genomes]
rs67422346	0.86[AMR][1000 genomes]
rs67723713	0.86[AMR][1000 genomes]
rs67749476	0.86[AMR][1000 genomes]
rs68076840	0.86[AMR][1000 genomes]
rs71567531	0.86[AMR][1000 genomes]
rs71567533	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71567534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71567535	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71567536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401379	0.86[AMR][1000 genomes]
rs73401390	0.83[AMR][1000 genomes]
rs73403103	0.86[AMR][1000 genomes]
rs73403107	0.83[AMR][1000 genomes]
rs7778995	0.86[AMR][1000 genomes]
rs7779268	0.86[AMR][1000 genomes]
rs7779342	0.86[AMR][1000 genomes]
rs7783606	0.86[AMR][1000 genomes]
rs7783618	0.86[AMR][1000 genomes]
rs7787830	0.83[AMR][1000 genomes]
rs7788790	0.86[AMR][1000 genomes]
rs7789312	0.86[AMR][1000 genomes]
rs7793425	0.86[AMR][1000 genomes]
rs7793510	0.86[AMR][1000 genomes]
rs7798877	0.89[ASN][1000 genomes]
rs7805070	0.86[AMR][1000 genomes]
rs7806230	0.86[AMR][1000 genomes]
rs7808942	0.86[AMR][1000 genomes]
rs7809188	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98804800-98809600	Enhancers	Fetal Intestine Small	intestine
3	chr7:98805000-98811400	Enhancers	Fetal Intestine Large	intestine
4	chr7:98805400-98809800	Enhancers	Placenta	Placenta
5	chr7:98805400-98811400	Enhancers	Pancreas	Pancrea
6	chr7:98806400-98808400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr7:98806400-98809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:98806800-98809200	Enhancers	Liver	Liver
9	chr7:98807400-98809800	Enhancers	HMEC	breast
10	chr7:98807600-98808000	Flanking Active TSS	Hela-S3	cervix
11	chr7:98807600-98808200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:98807600-98808400	Weak transcription	Colonic Mucosa	Colon
13	chr7:98807600-98808600	Flanking Active TSS	A549	lung
14	chr7:98807600-98809600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:98807600-98809600	Enhancers	Duodenum Mucosa	Duodenum
16	chr7:98807600-98809800	Enhancers	NHEK	skin
17	chr7:98807600-98810000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:98807800-98808000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr7:98807800-98808000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr7:98807800-98808000	Flanking Active TSS	Stomach Mucosa	stomach
21	chr7:98807800-98808200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:98807800-98808200	Flanking Active TSS	HepG2	liver
23	chr7:98807800-98809400	Enhancers	Placenta Amnion	Placenta Amnion

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