Variant report

Variant	rs6960805
Chromosome Location	chr7:98880642-98880643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98877937..98880713-chr8:37592736..37595677,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183154	Chromatin interaction
ENSG00000147475	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10215854	1.00[CHB][hapmap]
rs10235235	1.00[CHB][hapmap]
rs10268984	1.00[CHB][hapmap]
rs10808111	1.00[CHB][hapmap]
rs10808112	1.00[CHB][hapmap]
rs10953288	1.00[CHB][hapmap]
rs11971111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11972017	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11973173	1.00[CHB][hapmap]
rs11974593	1.00[CHB][hapmap]
rs11974885	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs11978345	1.00[CHB][hapmap]
rs11978582	1.00[CHB][hapmap]
rs11983985	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12531852	1.00[CHB][hapmap]
rs12535424	1.00[CHB][hapmap]
rs13243267	1.00[CHB][hapmap]
rs17161662	0.82[GIH][hapmap];0.88[MEX][hapmap]
rs17161669	0.82[GIH][hapmap];0.94[MEX][hapmap]
rs17161687	1.00[CHB][hapmap]
rs17660610	0.90[ASN][1000 genomes]
rs2395048	0.82[CEU][hapmap]
rs35296070	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs57685378	0.90[ASN][1000 genomes]
rs60205316	0.90[ASN][1000 genomes]
rs6651107	0.90[ASN][1000 genomes]
rs66556278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66758384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960810	1.00[CHB][hapmap]
rs6961579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732332	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs733991	0.82[GIH][hapmap]
rs73407278	0.90[ASN][1000 genomes]
rs73407296	0.90[ASN][1000 genomes]
rs740160	1.00[CHB][hapmap]
rs7795644	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7798877	0.81[MEX][hapmap]
rs9969217	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98875200-98886800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:98878000-98885600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:98880600-98883800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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