Variant report

Variant	rs57685378
Chromosome Location	chr7:98871071-98871072
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98740498..98742801-chr7:98868578..98871943,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11971111	0.82[ASN][1000 genomes]
rs11972017	0.90[ASN][1000 genomes]
rs11983985	1.00[ASN][1000 genomes]
rs17660610	1.00[ASN][1000 genomes]
rs60205316	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6651107	1.00[ASN][1000 genomes]
rs66556278	0.90[ASN][1000 genomes]
rs66758384	0.90[ASN][1000 genomes]
rs6960805	0.90[ASN][1000 genomes]
rs6961579	0.90[ASN][1000 genomes]
rs732332	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73407278	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407296	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7795644	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98863800-98871800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:98864800-98871600	Weak transcription	Gastric	stomach
4	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
5	chr7:98866000-98871400	Weak transcription	Hela-S3	cervix
6	chr7:98866200-98871600	Weak transcription	NHDF-Ad	bronchial
7	chr7:98866400-98871400	Weak transcription	Osteobl	bone
8	chr7:98866400-98871600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:98866400-98871600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:98866400-98871600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:98866400-98871600	Weak transcription	NHLF	lung
12	chr7:98866600-98871400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:98866600-98871600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:98866600-98874400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:98866600-98874400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:98866800-98871600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:98868400-98871600	Weak transcription	Placenta	Placenta
18	chr7:98868800-98871800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:98869600-98871600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:98869600-98871800	Enhancers	HMEC	breast
21	chr7:98869800-98873200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:98870200-98872200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:98870200-98872400	Enhancers	HUVEC	blood vessel
24	chr7:98870400-98871400	Enhancers	NHEK	skin
25	chr7:98870400-98871800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:98870400-98872200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:98870400-98872200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:98870400-98872200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:98870400-98872200	Enhancers	NH-A	brain
30	chr7:98870400-98873200	Enhancers	Stomach Mucosa	stomach
31	chr7:98871000-98871200	Weak transcription	A549	lung
32	chr7:98871000-98872200	Enhancers	GM12878-XiMat	blood

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