Variant report

Variant	rs73407278
Chromosome Location	chr7:98869224-98869225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98740498..98742801-chr7:98868578..98871943,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11971111	0.82[ASN][1000 genomes]
rs11972017	0.90[ASN][1000 genomes]
rs11983985	1.00[ASN][1000 genomes]
rs17660610	1.00[ASN][1000 genomes]
rs57685378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60205316	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6651107	1.00[ASN][1000 genomes]
rs66556278	0.90[ASN][1000 genomes]
rs66758384	0.90[ASN][1000 genomes]
rs6960805	0.90[ASN][1000 genomes]
rs6961579	0.90[ASN][1000 genomes]
rs732332	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73407296	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7795644	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98863800-98871800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:98864800-98871600	Weak transcription	Gastric	stomach
4	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
5	chr7:98866000-98871400	Weak transcription	Hela-S3	cervix
6	chr7:98866200-98870400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:98866200-98871600	Weak transcription	NHDF-Ad	bronchial
8	chr7:98866400-98870200	Weak transcription	HUVEC	blood vessel
9	chr7:98866400-98870400	Weak transcription	Stomach Mucosa	stomach
10	chr7:98866400-98870600	Weak transcription	A549	lung
11	chr7:98866400-98871400	Weak transcription	Osteobl	bone
12	chr7:98866400-98871600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:98866400-98871600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:98866400-98871600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:98866400-98871600	Weak transcription	NHLF	lung
16	chr7:98866600-98871400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:98866600-98871600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:98866600-98874400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:98866600-98874400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:98866800-98870200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:98866800-98870400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:98866800-98870400	Weak transcription	NH-A	brain
23	chr7:98866800-98871600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:98867000-98869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:98867000-98869800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:98867400-98869600	Weak transcription	HMEC	breast
27	chr7:98867400-98870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:98867400-98870400	Weak transcription	NHEK	skin
29	chr7:98868400-98871600	Weak transcription	Placenta	Placenta
30	chr7:98868800-98870400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:98868800-98871800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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