Variant report

Variant	rs11983985
Chromosome Location	chr7:98881168-98881169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11971111	0.82[ASN][1000 genomes]
rs11972017	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17660610	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57685378	1.00[ASN][1000 genomes]
rs60205316	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6651107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651108	1.00[CEU][hapmap]
rs66556278	0.90[ASN][1000 genomes]
rs66758384	0.90[ASN][1000 genomes]
rs6960805	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6961579	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs732332	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73407278	1.00[ASN][1000 genomes]
rs73407296	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7795644	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98875200-98886800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:98878000-98885600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:98880600-98883800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:98881000-98881200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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