Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:98890981-98891026	H1-hESC	embryonic stem cell:	n/a	chr7:98890982-98890993
2	CEBPB	chr7:98890905-98891097	HepG2	liver:	n/a	chr7:98890982-98890993
3	JUND	chr7:98890929-98891020	HepG2	liver:	n/a	n/a
4	POLR2A	chr7:98890111-98895513	K562	blood:	n/a	n/a
5	CEBPB	chr7:98890838-98891110	K562	blood:	n/a	chr7:98890982-98890993

Variant related genes	Relation type
MYH16	TF binding region

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11771702	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11974885	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11976700	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983985	1.00[CEU][hapmap]
rs12112936	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12113440	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12538893	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12705041	0.84[MEX][hapmap]
rs12705042	0.84[MEX][hapmap]
rs17161662	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17161669	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17161695	1.00[JPT][hapmap]
rs17161700	0.84[MEX][hapmap];1.00[TSI][hapmap]
rs17161726	0.84[MEX][hapmap]
rs17660610	0.84[AMR][1000 genomes]
rs28377312	0.84[MEX][hapmap]
rs28558950	0.83[MEX][hapmap]
rs28668326	0.84[MEX][hapmap]
rs41385645	0.84[MEX][hapmap];1.00[TSI][hapmap]
rs59131705	0.80[ASN][1000 genomes]
rs68164591	0.89[ASN][1000 genomes]
rs6957987	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6958704	0.89[ASN][1000 genomes]
rs6973408	0.89[ASN][1000 genomes]
rs732332	1.00[CEU][hapmap]
rs73395508	0.89[ASN][1000 genomes]
rs733991	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7795644	0.92[MEX][hapmap]
rs917152	0.84[MEX][hapmap]
rs9969217	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9969386	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98873200-98905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98881200-98899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:98885800-98891400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:98889000-98891400	Weak transcription	Stomach Mucosa	stomach
8	chr7:98890000-98891000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:98890000-98894400	Weak transcription	Lung	lung
10	chr7:98890400-98894200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:98890800-98892000	Enhancers	HepG2	liver
12	chr7:98890800-98905800	Weak transcription	Pancreas	Pancrea

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