Variant report

Variant	rs41385645
Chromosome Location	chr7:98974038-98974039
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98923500..98925484-chr7:98970656..98974432,3	K562	blood:
2	chr7:98954568..98956787-chr7:98970778..98974586,3	K562	blood:
3	chr7:98970407..98975516-chr7:99002028..99009396,17	MCF-7	breast:
4	chr7:98970740..98974571-chr7:99004724..99008680,16	MCF-7	breast:
5	chr7:98970545..98974719-chr7:98992685..98998543,7	MCF-7	breast:
6	chr7:98970980..98974747-chr7:98986775..98992580,7	MCF-7	breast:
7	chr7:98970993..98974296-chr7:98982055..98984760,3	K562	blood:
8	chr7:98964521..98966549-chr7:98972530..98974086,2	K562	blood:
9	chr7:98960735..98962615-chr7:98972304..98974444,2	K562	blood:
10	chr7:98968876..98974378-chr7:99004810..99008269,11	K562	blood:
11	chr7:98966757..98974253-chr7:98988800..98995304,7	K562	blood:
12	chr7:98959822..98968172-chr7:98968902..98974586,14	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106245	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000241685	Chromatin interaction
ENSG00000130429	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10279308	1.00[JPT][hapmap]
rs1045012	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11978089	1.00[JPT][hapmap]
rs17161700	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17161726	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17854665	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs2003499	1.00[JPT][hapmap]
rs2293256	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs28377312	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs28558950	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs28668326	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs3138	1.00[CHB][hapmap]
rs6651108	0.84[MEX][hapmap];1.00[TSI][hapmap]
rs6955490	1.00[JPT][hapmap]
rs6974831	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs7805661	1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs917152	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs952319	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv3422095	chr7:98971441-98974189	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98970800-98977000	Weak transcription	Fetal Lung	lung
2	chr7:98971000-98990400	Weak transcription	Fetal Kidney	kidney
3	chr7:98971400-98974200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:98971600-98974200	Active TSS	Rectal Smooth Muscle	rectum
5	chr7:98973000-98974200	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr7:98973000-98974400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:98973200-98974200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
8	chr7:98973200-98974200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr7:98973200-98974200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr7:98973200-98974200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr7:98973200-98978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:98973400-98974200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:98973400-98974200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr7:98973400-98974200	Enhancers	Liver	Liver
15	chr7:98973400-98974200	Enhancers	Colonic Mucosa	Colon
16	chr7:98973400-98974200	Enhancers	Fetal Intestine Large	intestine
17	chr7:98973400-98974200	Enhancers	Pancreas	Pancrea
18	chr7:98973400-98974200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:98973400-98974200	Enhancers	HepG2	liver
20	chr7:98973400-98974400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr7:98973400-98974600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:98973400-98974600	Weak transcription	Spleen	Spleen
23	chr7:98973400-98974800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:98973400-98975000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:98973400-98975000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:98973400-98975000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:98973400-98975400	Enhancers	HMEC	breast
28	chr7:98973400-98975400	Weak transcription	Osteobl	bone
29	chr7:98973400-98975600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:98973400-98976600	Weak transcription	NH-A	brain
31	chr7:98973400-98976600	Weak transcription	NHLF	lung
32	chr7:98973400-98976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:98973400-98976800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:98973400-98976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:98973400-98976800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:98973400-98976800	Weak transcription	HSMM	muscle
37	chr7:98973400-98976800	Weak transcription	HSMMtube	muscle
38	chr7:98973400-98977000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:98973400-98977000	Weak transcription	Brain Anterior Caudate	brain
40	chr7:98973400-98977000	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:98973400-98977000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:98973400-98977000	Weak transcription	Esophagus	oesophagus
43	chr7:98973400-98977000	Weak transcription	Right Atrium	heart
44	chr7:98973400-98977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr7:98973400-98977200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:98973400-98977200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:98973400-98977200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr7:98973400-98977600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:98973400-98977600	Weak transcription	Brain Substantia Nigra	brain
50	chr7:98973400-98977600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links