Variant report

Variant	rs6974831
Chromosome Location	chr7:99131605-99131606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99129008..99131718-chr7:99137131..99141580,3	K562	blood:
2	chr7:99128997..99131650-chr7:99148283..99150695,2	MCF-7	breast:
3	chr7:99128290..99131980-chr7:99159807..99163198,3	K562	blood:
4	chr7:99131004..99133205-chr7:99216601..99219194,3	K562	blood:
5	chr7:99129430..99132256-chr7:99148288..99150632,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221909	Chromatin interaction
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10251282	0.94[ASN][1000 genomes]
rs10279308	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1045012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11734	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11972210	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11978089	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17161700	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs17161726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs17854665	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2003499	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2293256	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2404487	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2404488	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28365067	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28377312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs28460612	0.94[ASN][1000 genomes]
rs28558950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs28668326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs28753399	0.94[ASN][1000 genomes]
rs34943973	0.94[ASN][1000 genomes]
rs3528	0.94[ASN][1000 genomes]
rs3823813	0.88[ASN][1000 genomes]
rs41258334	0.94[ASN][1000 genomes]
rs41385645	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs45441991	0.88[ASN][1000 genomes]
rs45448997	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs45451992	0.94[ASN][1000 genomes]
rs45461000	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs45492501	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45529541	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45555335	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45592335	0.88[ASN][1000 genomes]
rs45593341	0.88[ASN][1000 genomes]
rs55830753	0.88[ASN][1000 genomes]
rs55927283	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55942267	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56167514	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57367781	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57830676	0.88[ASN][1000 genomes]
rs59240302	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59574285	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59672032	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6955490	1.00[JPT][hapmap]
rs6956305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6976017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6977165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73397447	0.94[ASN][1000 genomes]
rs73397481	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73397499	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401507	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401510	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401516	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73403247	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403286	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405247	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711280	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73711293	1.00[ASN][1000 genomes]
rs73711294	1.00[ASN][1000 genomes]
rs73713507	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713531	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73713580	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7794068	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805661	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806754	0.88[ASN][1000 genomes]
rs917152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs952319	1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819741	chr7:99130848-99131615	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99122400-99132800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:99125200-99131800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr7:99125400-99131800	ZNF genes & repeats	Liver	Liver
4	chr7:99125600-99131800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:99125600-99131800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr7:99125800-99131800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:99125800-99131800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr7:99125800-99131800	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr7:99125800-99131800	ZNF genes & repeats	Fetal Lung	lung
10	chr7:99125800-99131800	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr7:99125800-99132000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:99125800-99132000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:99125800-99132000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
14	chr7:99125800-99133000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:99126000-99131800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr7:99126000-99131800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:99126000-99131800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr7:99126000-99131800	ZNF genes & repeats	Placenta	Placenta
19	chr7:99126000-99132000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:99126000-99132000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr7:99126000-99132000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr7:99126000-99132600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:99126000-99132800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:99126000-99132800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:99126000-99133200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:99126000-99133800	ZNF genes & repeats	Fetal Stomach	stomach
27	chr7:99126200-99131800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:99126400-99131800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:99126400-99131800	ZNF genes & repeats	A549	lung
30	chr7:99127800-99131800	ZNF genes & repeats	Fetal Brain Female	brain
31	chr7:99128000-99131800	ZNF genes & repeats	NHDF-Ad	bronchial
32	chr7:99128000-99132600	ZNF genes & repeats	HSMM	muscle
33	chr7:99128200-99131800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
34	chr7:99128200-99131800	ZNF genes & repeats	NH-A	brain
35	chr7:99128200-99132000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
36	chr7:99128800-99131800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:99129000-99131800	ZNF genes & repeats	Brain Germinal Matrix	brain
38	chr7:99130000-99131800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:99130200-99132200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:99130200-99132600	Strong transcription	Brain Angular Gyrus	brain
41	chr7:99130200-99138200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr7:99130200-99138200	Weak transcription	Hela-S3	cervix
43	chr7:99130400-99132600	Strong transcription	Brain Cingulate Gyrus	brain
44	chr7:99130600-99131800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr7:99130800-99131800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:99130800-99135800	Weak transcription	Primary T cells from cord blood	blood
47	chr7:99131000-99132800	Strong transcription	Brain Anterior Caudate	brain
48	chr7:99131200-99132000	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr7:99131400-99134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:99131400-99137000	Weak transcription	HepG2	liver

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