Variant report

Variant	rs56167514
Chromosome Location	chr7:99161347-99161348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99128290..99131980-chr7:99159807..99163198,3	K562	blood:
2	chr7:99157952..99162241-chr7:99187776..99189560,3	K562	blood:
3	chr7:99160643..99162338-chr7:99163911..99166886,2	MCF-7	breast:
4	chr7:99159942..99162931-chr7:99212527..99214599,4	MCF-7	breast:
5	chr7:99159531..99161508-chr7:99197527..99199299,2	K562	blood:
6	chr7:99101995..99104391-chr7:99159127..99161903,2	K562	blood:

Variant related genes	Relation type
ENSG00000196652	Chromatin interaction
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10251282	0.94[ASN][1000 genomes]
rs10279308	0.89[ASN][1000 genomes]
rs1045012	0.94[ASN][1000 genomes]
rs11734	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11972210	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11978089	0.89[ASN][1000 genomes]
rs17161726	0.94[ASN][1000 genomes]
rs17854665	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2003499	0.89[ASN][1000 genomes]
rs2293256	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2404487	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2404488	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28365067	0.94[ASN][1000 genomes]
rs28377312	0.94[ASN][1000 genomes]
rs28460612	0.94[ASN][1000 genomes]
rs28558950	0.94[ASN][1000 genomes]
rs28668326	0.94[ASN][1000 genomes]
rs28753399	0.94[ASN][1000 genomes]
rs34943973	0.94[ASN][1000 genomes]
rs3528	0.94[ASN][1000 genomes]
rs3823813	0.88[ASN][1000 genomes]
rs41258334	0.94[ASN][1000 genomes]
rs45441991	0.88[ASN][1000 genomes]
rs45448997	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs45451992	0.94[ASN][1000 genomes]
rs45461000	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs45492501	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45529541	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45555335	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45592335	0.88[ASN][1000 genomes]
rs45593341	0.88[ASN][1000 genomes]
rs55830753	0.88[ASN][1000 genomes]
rs55927283	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55942267	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57367781	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57830676	0.88[ASN][1000 genomes]
rs59240302	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59574285	0.94[ASN][1000 genomes]
rs59672032	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6956305	0.94[ASN][1000 genomes]
rs6974831	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976017	0.94[ASN][1000 genomes]
rs6977165	0.94[ASN][1000 genomes]
rs73397447	0.94[ASN][1000 genomes]
rs73397481	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73397499	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401507	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401510	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401516	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73403247	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403272	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403286	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403290	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405247	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711280	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73711293	1.00[ASN][1000 genomes]
rs73711294	1.00[ASN][1000 genomes]
rs73713507	1.00[ASN][1000 genomes]
rs73713531	0.94[ASN][1000 genomes]
rs73713580	0.94[ASN][1000 genomes]
rs7794068	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806754	0.88[ASN][1000 genomes]
rs917152	0.94[ASN][1000 genomes]
rs952319	0.94[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99157400-99161400	Weak transcription	Ovary	ovary
2	chr7:99157400-99177400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:99157400-99177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:99157600-99162200	Genic enhancers	Placenta	Placenta
5	chr7:99157600-99164200	Weak transcription	Right Atrium	heart
6	chr7:99157800-99161400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
7	chr7:99157800-99164800	Strong transcription	Primary T cells from cord blood	blood
8	chr7:99157800-99172200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:99157800-99172800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:99158000-99162200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:99158000-99162600	Strong transcription	Fetal Kidney	kidney
12	chr7:99158000-99162800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:99158000-99162800	Strong transcription	Fetal Lung	lung
14	chr7:99158000-99164200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:99158000-99164400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:99158000-99164600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:99158000-99166800	Strong transcription	Fetal Stomach	stomach
18	chr7:99158200-99161600	Genic enhancers	Hela-S3	cervix
19	chr7:99158200-99161800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:99158200-99162200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:99158200-99163400	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr7:99158200-99163400	Strong transcription	Colonic Mucosa	Colon
23	chr7:99158200-99163800	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr7:99158200-99164200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:99158200-99166600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:99158200-99166800	Strong transcription	Primary hematopoietic stem cells	blood
27	chr7:99158200-99171400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:99158200-99171800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:99158200-99172600	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:99158200-99173000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:99158400-99162200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:99158400-99162600	Strong transcription	Fetal Brain Male	brain
33	chr7:99158400-99162600	Strong transcription	Small Intestine	intestine
34	chr7:99158400-99162800	Strong transcription	Aorta	Aorta
35	chr7:99158400-99163200	Strong transcription	Spleen	Spleen
36	chr7:99158400-99163400	Strong transcription	Brain Angular Gyrus	brain
37	chr7:99158400-99163800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr7:99158400-99164400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:99158400-99164400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr7:99158400-99164400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:99158400-99164400	Strong transcription	Fetal Brain Female	brain
42	chr7:99158400-99164400	Strong transcription	Right Ventricle	heart
43	chr7:99158400-99164600	Strong transcription	Fetal Muscle Leg	muscle
44	chr7:99158400-99164800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr7:99158400-99165400	Strong transcription	Brain Germinal Matrix	brain
46	chr7:99158400-99166600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr7:99158400-99166800	Strong transcription	Fetal Intestine Small	intestine
48	chr7:99158400-99171400	Strong transcription	Liver	Liver
49	chr7:99158400-99172000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr7:99158400-99172800	Strong transcription	Fetal Intestine Large	intestine

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