Variant report

Variant	rs6976017
Chromosome Location	chr7:99249999-99250000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99245933..99247666-chr7:99249031..99251108,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11734	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17161937	1.00[TSI][hapmap]
rs17854665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[ASN][1000 genomes]
rs2003499	0.84[ASN][1000 genomes]
rs2023548	1.00[TSI][hapmap]
rs2293256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2404487	0.89[ASN][1000 genomes]
rs2404488	0.89[ASN][1000 genomes]
rs28365067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs34943973	0.89[ASN][1000 genomes]
rs3528	0.89[ASN][1000 genomes]
rs3823813	0.82[ASN][1000 genomes]
rs41258334	1.00[ASN][1000 genomes]
rs41279866	0.81[ASN][1000 genomes]
rs45441991	0.82[ASN][1000 genomes]
rs45448997	0.89[ASN][1000 genomes]
rs45451992	0.89[ASN][1000 genomes]
rs45461000	0.89[ASN][1000 genomes]
rs45492501	0.82[ASN][1000 genomes]
rs45527841	0.81[ASN][1000 genomes]
rs45529541	0.82[ASN][1000 genomes]
rs45532337	0.81[ASN][1000 genomes]
rs45555335	0.82[ASN][1000 genomes]
rs45592335	0.82[ASN][1000 genomes]
rs45593341	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55830753	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55927283	0.82[ASN][1000 genomes]
rs55942267	0.89[ASN][1000 genomes]
rs56167514	0.94[ASN][1000 genomes]
rs57367781	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57830676	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59240302	0.94[ASN][1000 genomes]
rs59574285	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59672032	0.89[ASN][1000 genomes]
rs6956305	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958669	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6974831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6977165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73397481	0.89[ASN][1000 genomes]
rs73397499	0.89[ASN][1000 genomes]
rs73401507	0.89[ASN][1000 genomes]
rs73401510	0.89[ASN][1000 genomes]
rs73401516	0.89[ASN][1000 genomes]
rs73403247	0.94[ASN][1000 genomes]
rs73403272	0.94[ASN][1000 genomes]
rs73403286	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73403290	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73405247	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73711280	0.89[ASN][1000 genomes]
rs73711293	0.94[ASN][1000 genomes]
rs73711294	0.94[ASN][1000 genomes]
rs73713507	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73713531	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713580	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713594	0.81[ASN][1000 genomes]
rs73713595	0.81[ASN][1000 genomes]
rs7794068	0.94[ASN][1000 genomes]
rs7805661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[ASN][1000 genomes]
rs7806754	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs952319	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99228400-99258000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:99228400-99258800	Weak transcription	Ovary	ovary
3	chr7:99229200-99267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:99229400-99257400	Weak transcription	Fetal Lung	lung
6	chr7:99229400-99257800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:99229800-99255400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:99229800-99257200	Weak transcription	Esophagus	oesophagus
9	chr7:99229800-99257600	Weak transcription	Pancreas	Pancrea
10	chr7:99229800-99260200	Weak transcription	Left Ventricle	heart
11	chr7:99229800-99272600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr7:99230200-99257200	Weak transcription	Gastric	stomach
13	chr7:99230400-99257600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:99230400-99272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:99230800-99258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:99231600-99252400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:99231800-99250000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:99231800-99258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:99231800-99258000	Weak transcription	Brain Substantia Nigra	brain
20	chr7:99231800-99260200	Weak transcription	K562	blood
21	chr7:99231800-99264600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:99231800-99268000	Weak transcription	Brain Anterior Caudate	brain
23	chr7:99231800-99268600	Weak transcription	HepG2	liver
24	chr7:99232000-99258600	Weak transcription	Primary B cells from cord blood	blood
25	chr7:99232000-99275000	Weak transcription	A549	lung
26	chr7:99232200-99250600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:99233000-99266000	Weak transcription	NHEK	skin
28	chr7:99235800-99276400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:99236600-99251000	Weak transcription	Lung	lung
30	chr7:99236800-99258400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:99236800-99260400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:99236800-99263000	Weak transcription	Placenta	Placenta
33	chr7:99237000-99272200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:99237200-99258000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:99237200-99258800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:99237200-99264800	Weak transcription	Right Ventricle	heart
37	chr7:99241000-99268800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:99241600-99264600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr7:99242200-99258800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:99242200-99261400	Weak transcription	HSMMtube	muscle
41	chr7:99242400-99272400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:99242800-99261000	Weak transcription	Aorta	Aorta
43	chr7:99242800-99267600	Weak transcription	GM12878-XiMat	blood
44	chr7:99243000-99253200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:99243000-99278800	Weak transcription	Brain Angular Gyrus	brain
46	chr7:99243200-99251200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:99243200-99251200	Weak transcription	Dnd41	blood
48	chr7:99243200-99267600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:99243400-99257600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:99243600-99276800	Weak transcription	Stomach Smooth Muscle	stomach

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