Variant report

Variant	rs6977165
Chromosome Location	chr7:99269397-99269398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99259676..99261606-chr7:99268360..99270829,2	MCF-7	breast:
2	chr7:99261684..99264974-chr7:99265546..99269514,5	K562	blood:
3	chr7:99257881..99260549-chr7:99267087..99269517,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP3A7-2	chr7:99268533-99269501	NONHSAT122265

Variant related genes	Relation type
ENSG00000106258	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17854665	0.82[ASN][1000 genomes]
rs2293256	0.89[ASN][1000 genomes]
rs2404487	0.89[ASN][1000 genomes]
rs2404488	0.89[ASN][1000 genomes]
rs28365067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34943973	0.89[ASN][1000 genomes]
rs3528	0.89[ASN][1000 genomes]
rs3823813	0.82[ASN][1000 genomes]
rs41258334	1.00[ASN][1000 genomes]
rs41279866	0.81[ASN][1000 genomes]
rs45441991	0.82[ASN][1000 genomes]
rs45448997	0.89[ASN][1000 genomes]
rs45451992	0.89[ASN][1000 genomes]
rs45461000	0.89[ASN][1000 genomes]
rs45492501	0.82[ASN][1000 genomes]
rs45527841	0.81[ASN][1000 genomes]
rs45529541	0.82[ASN][1000 genomes]
rs45532337	0.81[ASN][1000 genomes]
rs45555335	0.82[ASN][1000 genomes]
rs45592335	0.82[ASN][1000 genomes]
rs45593341	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55830753	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55927283	0.82[ASN][1000 genomes]
rs55942267	0.89[ASN][1000 genomes]
rs56167514	0.94[ASN][1000 genomes]
rs57367781	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57830676	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs58649180	0.80[AFR][1000 genomes]
rs59240302	0.94[ASN][1000 genomes]
rs59574285	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59672032	0.89[ASN][1000 genomes]
rs6956305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958669	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6974831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6976017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494455	0.80[AFR][1000 genomes]
rs73397481	0.89[ASN][1000 genomes]
rs73397499	0.89[ASN][1000 genomes]
rs73401507	0.89[ASN][1000 genomes]
rs73401510	0.89[ASN][1000 genomes]
rs73401516	0.89[ASN][1000 genomes]
rs73403247	0.94[ASN][1000 genomes]
rs73403272	0.94[ASN][1000 genomes]
rs73403286	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73403290	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73405247	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73711280	0.89[ASN][1000 genomes]
rs73711293	0.94[ASN][1000 genomes]
rs73711294	0.94[ASN][1000 genomes]
rs73713507	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73713531	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713580	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713594	0.81[ASN][1000 genomes]
rs73713595	0.81[ASN][1000 genomes]
rs7794068	0.94[ASN][1000 genomes]
rs7805661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7806754	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs952319	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99229800-99272600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:99230400-99272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr7:99232000-99275000	Weak transcription	A549	lung
5	chr7:99235800-99276400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:99237000-99272200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:99242400-99272400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:99243000-99278800	Weak transcription	Brain Angular Gyrus	brain
9	chr7:99243600-99276800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:99251600-99276400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:99254400-99275400	Weak transcription	Fetal Stomach	stomach
12	chr7:99255800-99277000	Weak transcription	Fetal Brain Male	brain
13	chr7:99256600-99270200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr7:99257200-99274600	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr7:99257400-99274600	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr7:99257800-99271400	Weak transcription	Fetal Thymus	thymus
17	chr7:99258400-99276400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:99258600-99274400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:99258600-99274800	Weak transcription	Lung	lung
20	chr7:99258600-99276600	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:99259000-99271800	Weak transcription	Ovary	ovary
22	chr7:99259200-99270200	Strong transcription	Fetal Intestine Large	intestine
23	chr7:99259200-99271800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr7:99260200-99277000	Weak transcription	Spleen	Spleen
25	chr7:99260600-99276600	Weak transcription	Adipose Nuclei	Adipose
26	chr7:99260600-99276800	Weak transcription	Left Ventricle	heart
27	chr7:99261200-99273600	Weak transcription	Gastric	stomach
28	chr7:99261200-99274400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:99261400-99272200	Weak transcription	Primary T cells from cord blood	blood
30	chr7:99261400-99277000	Weak transcription	Small Intestine	intestine
31	chr7:99262200-99272000	Strong transcription	Liver	Liver
32	chr7:99263400-99273000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:99263600-99269400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:99263600-99277400	Weak transcription	Aorta	Aorta
35	chr7:99264000-99270200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr7:99264400-99270200	Weak transcription	Esophagus	oesophagus
37	chr7:99264400-99273400	Weak transcription	Stomach Mucosa	stomach
38	chr7:99264600-99270600	Weak transcription	Colonic Mucosa	Colon
39	chr7:99264600-99273400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:99266600-99270000	Weak transcription	Pancreas	Pancrea
41	chr7:99266600-99270200	Weak transcription	Fetal Lung	lung
42	chr7:99267000-99270000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:99267800-99272600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:99268000-99270200	Weak transcription	K562	blood
45	chr7:99268000-99272400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr7:99268600-99269600	Enhancers	HepG2	liver
47	chr7:99268800-99270200	Strong transcription	Fetal Intestine Small	intestine
48	chr7:99269000-99273000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:99269000-99276600	Weak transcription	HMEC	breast
50	chr7:99269200-99274200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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