Variant report

Variant	rs73403247
Chromosome Location	chr7:99088730-99088731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99087112..99089967-chr7:99096427..99097966,2	K562	blood:
2	chr7:99056334..99058020-chr7:99086600..99089591,2	K562	blood:
3	chr7:99087355..99090300-chr7:99092149..99093671,2	K562	blood:
4	chr7:99056359..99058641-chr7:99087120..99089795,3	K562	blood:
5	chr7:99072080..99078067-chr7:99085076..99089969,8	K562	blood:
6	chr7:99060187..99063147-chr7:99085147..99088743,3	K562	blood:
7	chr7:99087251..99089086-chr7:99094338..99097162,2	MCF-7	breast:
8	chr7:99088377..99091896-chr7:99094742..99098845,4	MCF-7	breast:
9	chr7:99088467..99090310-chr7:99096466..99097999,2	K562	blood:
10	chr7:99087335..99090288-chr7:99159181..99160832,2	K562	blood:
11	chr7:99079813..99086150-chr7:99087321..99093503,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198556	Chromatin interaction
ENSG00000241468	Chromatin interaction
ENSG00000160908	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10251282	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10279308	0.89[ASN][1000 genomes]
rs1045012	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11734	0.94[ASN][1000 genomes]
rs11972210	0.88[ASN][1000 genomes]
rs11978089	0.89[ASN][1000 genomes]
rs17161700	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17161726	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17854665	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2003499	0.89[ASN][1000 genomes]
rs2293256	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2404487	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2404488	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28365067	0.94[ASN][1000 genomes]
rs28377312	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28460612	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28558950	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28668326	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28753399	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34943973	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3528	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3823813	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41258334	0.94[ASN][1000 genomes]
rs45441991	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45448997	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45451992	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45461000	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45492501	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45529541	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45555335	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45592335	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45593341	0.88[ASN][1000 genomes]
rs55830753	0.88[ASN][1000 genomes]
rs55927283	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55942267	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56167514	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57367781	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57830676	0.88[ASN][1000 genomes]
rs57832867	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59240302	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59574285	0.94[ASN][1000 genomes]
rs59672032	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6956305	0.94[ASN][1000 genomes]
rs6974831	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6976017	0.94[ASN][1000 genomes]
rs6977165	0.94[ASN][1000 genomes]
rs73397447	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73397481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73397499	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73401507	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73401510	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73401516	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73403272	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403286	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403290	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73405247	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73711280	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73711293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713507	1.00[ASN][1000 genomes]
rs73713531	0.94[ASN][1000 genomes]
rs73713580	0.94[ASN][1000 genomes]
rs7794068	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7805661	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7806754	0.88[ASN][1000 genomes]
rs917152	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs952319	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99071200-99091000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:99071200-99091600	Weak transcription	Small Intestine	intestine
3	chr7:99071400-99090400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:99071400-99090600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:99071400-99090600	Weak transcription	Right Atrium	heart
6	chr7:99071400-99096200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:99071600-99090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:99071600-99091200	Weak transcription	Fetal Heart	heart
9	chr7:99071800-99090400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:99071800-99090400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:99071800-99090400	Weak transcription	Psoas Muscle	Psoas
12	chr7:99071800-99090600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:99071800-99091600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:99072600-99091200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:99074000-99090400	Weak transcription	Colonic Mucosa	Colon
16	chr7:99076600-99090400	Weak transcription	Lung	lung
17	chr7:99076800-99089800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:99076800-99090000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:99076800-99090400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:99077000-99089800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:99077000-99089800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:99077000-99090400	Weak transcription	Esophagus	oesophagus
23	chr7:99077000-99090600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:99077000-99091200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:99077200-99090800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:99077200-99091200	Weak transcription	Hela-S3	cervix
27	chr7:99077400-99090000	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:99077600-99090400	Weak transcription	Fetal Lung	lung
29	chr7:99077800-99089600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:99078200-99089600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr7:99078200-99090400	Weak transcription	NHLF	lung
32	chr7:99078400-99091200	Weak transcription	NHDF-Ad	bronchial
33	chr7:99080200-99089800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:99080200-99090000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:99080200-99090400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:99080200-99090600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:99080600-99090400	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:99082000-99089800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:99082000-99090400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr7:99082000-99090400	Weak transcription	Left Ventricle	heart
41	chr7:99082200-99090400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:99082200-99090600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr7:99083000-99089800	Weak transcription	Placenta	Placenta
44	chr7:99083000-99090200	Weak transcription	Pancreas	Pancrea
45	chr7:99083000-99090400	Weak transcription	Spleen	Spleen
46	chr7:99083000-99091200	Weak transcription	Aorta	Aorta
47	chr7:99083200-99090400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:99083400-99090200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:99083400-99090200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr7:99083600-99088800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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