Variant report

Variant	rs11972210
Chromosome Location	chr7:99206943-99206944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99205873..99207516-chr7:99209310..99210916,2	K562	blood:
2	chr7:99206867..99210105-chr7:99213007..99216008,4	K562	blood:
3	chr7:99199487..99203566-chr7:99204354..99207770,4	K562	blood:
4	chr7:99200742..99203707-chr7:99205999..99209249,3	K562	blood:

Variant related genes	Relation type
ENSG00000244219	Chromatin interaction
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10251282	0.83[ASN][1000 genomes]
rs1045012	0.83[ASN][1000 genomes]
rs11734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17161726	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17854665	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs2003499	1.00[JPT][hapmap]
rs2293256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2404487	0.83[ASN][1000 genomes]
rs2404488	0.83[ASN][1000 genomes]
rs28365067	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28377312	0.83[ASN][1000 genomes]
rs28460612	0.83[ASN][1000 genomes]
rs28558950	0.83[ASN][1000 genomes]
rs28668326	0.83[ASN][1000 genomes]
rs28753399	0.83[ASN][1000 genomes]
rs34943973	0.83[ASN][1000 genomes]
rs3528	0.83[ASN][1000 genomes]
rs41258334	0.94[ASN][1000 genomes]
rs45448997	0.83[ASN][1000 genomes]
rs45451992	0.83[ASN][1000 genomes]
rs45461000	0.83[ASN][1000 genomes]
rs45593341	0.88[ASN][1000 genomes]
rs55830753	0.88[ASN][1000 genomes]
rs55942267	0.83[ASN][1000 genomes]
rs56167514	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57367781	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57830676	0.88[ASN][1000 genomes]
rs59240302	0.88[ASN][1000 genomes]
rs59574285	0.94[ASN][1000 genomes]
rs59672032	0.83[ASN][1000 genomes]
rs6956305	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6974831	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6976017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6977165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73397447	0.83[ASN][1000 genomes]
rs73397481	0.83[ASN][1000 genomes]
rs73397499	0.83[ASN][1000 genomes]
rs73401507	0.83[ASN][1000 genomes]
rs73401510	0.83[ASN][1000 genomes]
rs73401516	0.83[ASN][1000 genomes]
rs73403247	0.88[ASN][1000 genomes]
rs73403272	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73403286	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73403290	0.88[ASN][1000 genomes]
rs73405247	0.88[ASN][1000 genomes]
rs73711280	0.83[ASN][1000 genomes]
rs73711293	0.88[ASN][1000 genomes]
rs73711294	0.88[ASN][1000 genomes]
rs73713507	0.88[ASN][1000 genomes]
rs73713531	0.94[ASN][1000 genomes]
rs73713580	0.94[ASN][1000 genomes]
rs7794068	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7805661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7806754	0.88[ASN][1000 genomes]
rs917152	0.83[ASN][1000 genomes]
rs952319	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99198400-99213800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:99199800-99214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:99202400-99209400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:99204200-99213600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:99205400-99213400	Weak transcription	HepG2	liver
7	chr7:99205800-99207800	Weak transcription	Placenta	Placenta

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