Variant report

Variant	rs73403290
Chromosome Location	chr7:99157828-99157829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:99157689-99158008	HepG2	liver:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99006486..99009069-chr7:99155267..99158163,2	K562	blood:
2	chr7:99101331..99104822-chr7:99153806..99158131,11	K562	blood:
3	chr7:99005603..99007986-chr7:99155532..99158163,2	K562	blood:
4	chr7:99062283..99063920-chr7:99156956..99159441,2	K562	blood:
5	chr7:99153240..99158172-chr7:99212624..99218049,13	K562	blood:
6	chr7:99068908..99072651-chr7:99154750..99158224,8	K562	blood:
7	chr7:99101000..99104995-chr7:99153806..99158171,7	K562	blood:
8	chr7:99156838..99159123-chr7:99587844..99590431,2	K562	blood:
9	chr7:99148330..99152549-chr7:99153303..99160203,7	MCF-7	breast:
10	chr7:99068023..99071798-chr7:99154715..99160193,6	K562	blood:
11	chr7:99157018..99158552-chr7:99440966..99442480,2	K562	blood:
12	chr7:99155790..99158631-chr7:99212983..99215798,6	K562	blood:

No data

Variant related genes	Relation type
FAM200A	TF binding region
ENSG00000248919	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000241468	Chromatin interaction
ENSG00000198556	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000235713	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000106244	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10251282	0.94[ASN][1000 genomes]
rs10279308	0.89[ASN][1000 genomes]
rs1045012	0.94[ASN][1000 genomes]
rs11734	0.94[ASN][1000 genomes]
rs11972210	0.88[ASN][1000 genomes]
rs11978089	0.89[ASN][1000 genomes]
rs17161726	0.94[ASN][1000 genomes]
rs17854665	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2003499	0.89[ASN][1000 genomes]
rs2293256	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2404487	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2404488	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28365067	0.94[ASN][1000 genomes]
rs28377312	0.94[ASN][1000 genomes]
rs28460612	0.94[ASN][1000 genomes]
rs28558950	0.94[ASN][1000 genomes]
rs28668326	0.94[ASN][1000 genomes]
rs28753399	0.94[ASN][1000 genomes]
rs34943973	0.94[ASN][1000 genomes]
rs3528	0.94[ASN][1000 genomes]
rs3823813	0.88[ASN][1000 genomes]
rs41258334	0.94[ASN][1000 genomes]
rs45441991	0.88[ASN][1000 genomes]
rs45448997	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs45451992	0.94[ASN][1000 genomes]
rs45461000	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs45492501	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45529541	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45555335	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45592335	0.88[ASN][1000 genomes]
rs45593341	0.88[ASN][1000 genomes]
rs55830753	0.88[ASN][1000 genomes]
rs55927283	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55942267	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56167514	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57367781	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57830676	0.88[ASN][1000 genomes]
rs59240302	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59574285	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59672032	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6956305	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6974831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976017	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6977165	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73397447	0.94[ASN][1000 genomes]
rs73397481	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73397499	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401507	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401510	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73401516	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73403247	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403272	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403286	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405247	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73711280	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73711293	1.00[ASN][1000 genomes]
rs73711294	1.00[ASN][1000 genomes]
rs73713507	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713531	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73713580	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7794068	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805661	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806754	0.88[ASN][1000 genomes]
rs917152	0.94[ASN][1000 genomes]
rs952319	0.94[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99154800-99158200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:99155000-99158000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:99155200-99158000	Active TSS	A549	lung
4	chr7:99155200-99158000	Active TSS	GM12878-XiMat	blood
5	chr7:99155200-99158200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:99155400-99158000	Active TSS	Sigmoid Colon	Sigmoid Colon
7	chr7:99157000-99158000	Flanking Active TSS	Dnd41	blood
8	chr7:99157000-99158200	Weak transcription	Spleen	Spleen
9	chr7:99157200-99158400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:99157200-99158400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr7:99157400-99158000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:99157400-99158000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:99157400-99158000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr7:99157400-99158000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr7:99157400-99158000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:99157400-99158000	Enhancers	Fetal Intestine Large	intestine
17	chr7:99157400-99158000	Genic enhancers	Fetal Lung	lung
18	chr7:99157400-99158200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:99157400-99158200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:99157400-99158200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:99157400-99158200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:99157400-99158200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr7:99157400-99158200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr7:99157400-99158200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:99157400-99158200	Enhancers	Brain Angular Gyrus	brain
26	chr7:99157400-99158200	Enhancers	Brain Cingulate Gyrus	brain
27	chr7:99157400-99158200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:99157400-99158200	Weak transcription	Brain Substantia Nigra	brain
29	chr7:99157400-99158200	Enhancers	Colon Smooth Muscle	Colon
30	chr7:99157400-99158200	Enhancers	Fetal Heart	heart
31	chr7:99157400-99158200	Weak transcription	Gastric	stomach
32	chr7:99157400-99158200	Enhancers	Pancreas	Pancrea
33	chr7:99157400-99158200	Weak transcription	HUVEC	blood vessel
34	chr7:99157400-99158400	Weak transcription	Aorta	Aorta
35	chr7:99157400-99158400	Enhancers	Stomach Mucosa	stomach
36	chr7:99157400-99158600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr7:99157400-99158600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr7:99157400-99159400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr7:99157400-99159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr7:99157400-99161400	Weak transcription	Ovary	ovary
41	chr7:99157400-99177400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr7:99157400-99177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr7:99157600-99158000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:99157600-99158000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:99157600-99158000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:99157600-99158000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr7:99157600-99158000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:99157600-99158000	Enhancers	Colonic Mucosa	Colon
49	chr7:99157600-99158000	Weak transcription	Fetal Kidney	kidney
50	chr7:99157600-99158000	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links