Variant report

Variant	rs7806754
Chromosome Location	chr7:99289924-99289925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99261966..99264230-chr7:99288862..99291272,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11972210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2293256	0.83[ASN][1000 genomes]
rs2404770	1.00[CEU][hapmap]
rs2687133	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2687134	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2687139	1.00[CEU][hapmap]
rs2687140	1.00[CEU][hapmap]
rs2740561	1.00[CEU][hapmap]
rs2741872	0.85[EUR][1000 genomes]
rs28365067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3138	1.00[CHB][hapmap]
rs3528	0.83[ASN][1000 genomes]
rs41258334	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41279866	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45461000	0.83[ASN][1000 genomes]
rs45527841	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45532337	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45593341	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646461	0.95[EUR][1000 genomes]
rs55830753	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942267	0.83[ASN][1000 genomes]
rs56167514	0.88[ASN][1000 genomes]
rs57367781	0.88[ASN][1000 genomes]
rs57830676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58649180	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59240302	0.88[ASN][1000 genomes]
rs59574285	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59672032	0.83[ASN][1000 genomes]
rs6956305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6958669	0.84[AFR][1000 genomes]
rs6974831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6976017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6977165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72494455	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73401507	0.83[ASN][1000 genomes]
rs73401510	0.83[ASN][1000 genomes]
rs73401516	0.83[ASN][1000 genomes]
rs73403247	0.88[ASN][1000 genomes]
rs73403272	0.88[ASN][1000 genomes]
rs73403286	0.88[ASN][1000 genomes]
rs73403290	0.88[ASN][1000 genomes]
rs73405247	0.88[ASN][1000 genomes]
rs73711293	0.88[ASN][1000 genomes]
rs73711294	0.88[ASN][1000 genomes]
rs73713507	0.88[ASN][1000 genomes]
rs73713531	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73713580	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73713594	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73713595	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7794068	0.88[ASN][1000 genomes]
rs7805661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs952319	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99273800-99290400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:99277000-99295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:99278000-99290800	Weak transcription	Pancreas	Pancrea
4	chr7:99283800-99290200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:99284600-99290200	Weak transcription	K562	blood
6	chr7:99289600-99290800	Enhancers	HepG2	liver

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