Variant report

Variant	rs45527841
Chromosome Location	chr7:99310965-99310966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99307529..99309266-chr7:99310963..99313906,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11734	0.81[ASN][1000 genomes]
rs2687133	0.90[EUR][1000 genomes]
rs2687134	0.90[EUR][1000 genomes]
rs2741872	0.85[EUR][1000 genomes]
rs28365067	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41258334	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41279866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45515892	0.82[AFR][1000 genomes]
rs45532337	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45593341	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4646461	0.95[EUR][1000 genomes]
rs55830753	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57830676	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58649180	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59574285	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6956305	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6976017	0.81[ASN][1000 genomes]
rs6977165	0.81[ASN][1000 genomes]
rs72494455	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73713531	0.81[ASN][1000 genomes]
rs73713580	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73713594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806754	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3378448	chr7:99295540-99331065	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv522107	chr7:99300758-99314986	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99297800-99316200	Weak transcription	Gastric	stomach
2	chr7:99297800-99317400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:99298000-99311600	Weak transcription	Pancreas	Pancrea
4	chr7:99301400-99315400	Strong transcription	Liver	Liver
5	chr7:99303200-99318200	Weak transcription	Fetal Heart	heart
6	chr7:99303200-99337200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:99304800-99318000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:99305000-99311400	Weak transcription	Aorta	Aorta
9	chr7:99305200-99311400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:99305600-99317600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:99306000-99314600	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:99306000-99339000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:99306200-99317800	Weak transcription	Adipose Nuclei	Adipose
14	chr7:99306800-99340800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:99307000-99312200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:99307200-99314200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:99307200-99317200	Weak transcription	Primary T cells from cord blood	blood
18	chr7:99307200-99334400	Weak transcription	Left Ventricle	heart
19	chr7:99307400-99318000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:99308200-99311200	Weak transcription	NHEK	skin
21	chr7:99308200-99311400	Weak transcription	HMEC	breast
22	chr7:99308200-99317600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:99308400-99311200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:99310800-99312000	Enhancers	Hela-S3	cervix

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