Variant report

Variant	rs2741872
Chromosome Location	chr7:99339776-99339777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10211	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10229552	0.83[ASN][1000 genomes]
rs10238965	0.84[JPT][hapmap]
rs10242455	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10254729	0.84[JPT][hapmap]
rs10282706	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11772470	0.84[JPT][hapmap]
rs12334072	0.81[ASN][1000 genomes]
rs12334077	0.82[ASN][1000 genomes]
rs12360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13362853	0.81[ASN][1000 genomes]
rs1357319	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1403196	0.95[ASN][1000 genomes]
rs1419745	0.85[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs15524	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs17161774	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs17161780	0.80[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs17161783	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs1818797	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1851425	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1851427	0.84[ASN][1000 genomes]
rs1859690	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.80[ASN][1000 genomes]
rs1879859	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2005548	0.82[ASN][1000 genomes]
rs2037497	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2037498	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2037499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2090949	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2140128	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2177180	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2222411	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2257401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2404769	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2404770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687072	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687075	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2687076	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2687077	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2687078	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2687079	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2687081	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2687084	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2687085	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2687086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2687087	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.92[ASN][1000 genomes]
rs2687133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687135	0.98[ASN][1000 genomes]
rs2687136	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687137	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687140	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687141	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687142	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687143	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2687145	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2740558	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2740559	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2740560	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2740561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2740562	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2740563	0.93[ASN][1000 genomes]
rs2740565	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28365067	1.00[CEU][hapmap]
rs2948343	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2948344	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3735453	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs3800960	0.82[JPT][hapmap]
rs41279866	0.85[EUR][1000 genomes]
rs45442295	0.86[ASN][1000 genomes]
rs45527841	0.85[EUR][1000 genomes]
rs45532337	0.85[EUR][1000 genomes]
rs45593341	0.85[EUR][1000 genomes]
rs45600842	0.86[ASN][1000 genomes]
rs45624139	0.98[ASN][1000 genomes]
rs4646446	0.90[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs4646447	0.85[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs4646449	0.85[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs4646450	0.90[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs4646453	0.85[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs4646456	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs4646457	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4646458	0.85[CHB][hapmap];0.80[CHD][hapmap]
rs4646461	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646462	0.88[ASN][1000 genomes]
rs4646465	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55830753	0.85[EUR][1000 genomes]
rs55852703	0.98[ASN][1000 genomes]
rs57830676	0.80[EUR][1000 genomes]
rs58649180	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59172435	0.88[ASN][1000 genomes]
rs60298785	0.88[ASN][1000 genomes]
rs61593387	0.88[ASN][1000 genomes]
rs6465750	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6961634	0.84[JPT][hapmap]
rs72494453	0.83[ASN][1000 genomes]
rs72494454	0.84[ASN][1000 genomes]
rs72494455	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494456	0.88[ASN][1000 genomes]
rs73410654	0.98[ASN][1000 genomes]
rs73713594	0.85[EUR][1000 genomes]
rs73713595	0.85[EUR][1000 genomes]
rs776741	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs776742	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs776744	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs776745	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs776746	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7806754	0.85[EUR][1000 genomes]
rs7808022	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs868564	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs939955	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99306800-99340800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:99311800-99349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:99334800-99340800	Weak transcription	Pancreas	Pancrea
4	chr7:99335800-99340000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:99335800-99340600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:99337000-99341800	Enhancers	HepG2	liver
7	chr7:99337200-99339800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr7:99337600-99339800	Enhancers	HSMMtube	muscle
9	chr7:99337600-99341000	Enhancers	Fetal Muscle Leg	muscle
10	chr7:99337800-99340800	Weak transcription	Brain Angular Gyrus	brain
11	chr7:99338400-99339800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:99338800-99341000	Enhancers	Liver	Liver
13	chr7:99339000-99339800	Weak transcription	Hela-S3	cervix
14	chr7:99339200-99346400	Weak transcription	Aorta	Aorta
15	chr7:99339200-99352200	Weak transcription	Left Ventricle	heart
16	chr7:99339400-99340400	Weak transcription	Psoas Muscle	Psoas

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