Variant report

Variant	rs776741
Chromosome Location	chr7:99279136-99279137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99277694..99280617-chr7:99280662..99284055,5	K562	blood:
2	chr7:99226823..99229371-chr7:99278363..99279988,2	K562	blood:
3	chr7:99214995..99216621-chr7:99278112..99280830,2	MCF-7	breast:
4	chr7:99214034..99216818-chr7:99278622..99282260,3	K562	blood:
5	chr7:99278416..99280408-chr7:99285917..99287760,2	K562	blood:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10211	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10225314	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs10229552	0.82[ASN][1000 genomes]
rs10242455	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs10282706	0.80[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs12334077	0.81[ASN][1000 genomes]
rs12360	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs13362853	0.80[ASN][1000 genomes]
rs1357319	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1403196	0.81[ASN][1000 genomes]
rs1419745	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs15524	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs17161774	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17161780	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17161783	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1818797	0.81[ASN][1000 genomes]
rs1851425	0.81[ASN][1000 genomes]
rs1851427	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1859690	0.85[CHB][hapmap]
rs1879859	0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2005548	0.83[ASN][1000 genomes]
rs2037498	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2037499	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs2177180	0.81[ASN][1000 genomes]
rs2222411	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2257401	0.91[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2404770	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2687075	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs2687076	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2687077	0.81[ASN][1000 genomes]
rs2687078	0.81[ASN][1000 genomes]
rs2687079	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2687081	0.83[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2687084	0.81[ASN][1000 genomes]
rs2687085	0.81[ASN][1000 genomes]
rs2687086	0.91[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2687087	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2687133	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs2687134	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs2687136	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2687139	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2687140	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2687142	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs2687144	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs2687145	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2740561	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs2740565	0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2948343	0.81[ASN][1000 genomes]
rs2948344	0.81[ASN][1000 genomes]
rs3735453	0.85[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs3800960	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs3823812	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45442295	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs45600842	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4646446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646447	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646449	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646450	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs4646453	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646456	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646457	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs4646458	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646462	0.89[ASN][1000 genomes]
rs4646465	0.81[ASN][1000 genomes]
rs58024720	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59172435	0.89[ASN][1000 genomes]
rs60298785	0.89[ASN][1000 genomes]
rs60865030	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61337492	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61593387	0.89[ASN][1000 genomes]
rs6465750	0.85[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs72494453	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72494454	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72494456	0.89[ASN][1000 genomes]
rs776742	0.83[ASN][1000 genomes]
rs776744	0.83[ASN][1000 genomes]
rs776745	0.83[ASN][1000 genomes]
rs776746	0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7798931	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7808022	0.85[CHB][hapmap]
rs939955	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99273800-99290400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:99277000-99295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:99277200-99281200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:99277200-99282800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:99277800-99279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:99277800-99279200	Weak transcription	A549	lung
7	chr7:99277800-99282400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:99278000-99290800	Weak transcription	Pancreas	Pancrea
9	chr7:99278200-99283000	Weak transcription	HepG2	liver
10	chr7:99278400-99282600	Weak transcription	Liver	Liver
11	chr7:99278400-99289000	Weak transcription	Psoas Muscle	Psoas
12	chr7:99278600-99282800	Weak transcription	K562	blood
13	chr7:99278800-99279600	Weak transcription	Spleen	Spleen

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