Variant report

Variant	rs10225314
Chromosome Location	chr7:99203653-99203654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99195460..99197135-chr7:99202683..99204420,2	K562	blood:

Variant related genes	Relation type
ENSG00000244219	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1004387	1.00[CEU][hapmap]
rs10238965	0.93[JPT][hapmap]
rs10240199	0.89[ASN][1000 genomes]
rs10242455	0.80[JPT][hapmap]
rs10254729	0.93[JPT][hapmap]
rs10265385	0.85[ASN][1000 genomes]
rs10271049	0.87[JPT][hapmap]
rs1043466	0.87[JPT][hapmap]
rs10464604	0.84[EUR][1000 genomes]
rs11539770	0.84[EUR][1000 genomes]
rs11772470	0.93[JPT][hapmap]
rs11976018	0.87[JPT][hapmap]
rs13240600	0.93[JPT][hapmap]
rs1419745	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs15524	0.80[JPT][hapmap]
rs17161698	0.84[EUR][1000 genomes]
rs17161768	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17161769	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17161771	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17161772	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17161774	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs17161780	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs17161783	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs1851427	0.92[EUR][1000 genomes]
rs1859690	0.80[JPT][hapmap]
rs1980307	0.87[JPT][hapmap]
rs1985453	0.84[EUR][1000 genomes]
rs2057906	0.84[EUR][1000 genomes]
rs2240384	0.87[JPT][hapmap]
rs2240385	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs2269985	0.84[EUR][1000 genomes]
rs2272168	0.88[JPT][hapmap]
rs2280600	0.87[JPT][hapmap]
rs2280601	0.82[JPT][hapmap]
rs2404322	0.84[EUR][1000 genomes]
rs2687086	0.86[JPT][hapmap]
rs3137	0.80[JPT][hapmap]
rs3764815	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs3779354	0.87[JPT][hapmap]
rs3800960	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823812	0.92[EUR][1000 genomes]
rs3843540	0.87[JPT][hapmap]
rs45442295	0.92[EUR][1000 genomes]
rs45492098	0.84[EUR][1000 genomes]
rs45540134	0.84[EUR][1000 genomes]
rs45600842	0.92[EUR][1000 genomes]
rs45622743	0.84[EUR][1000 genomes]
rs4646446	0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs4646447	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs4646449	0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs4646453	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs4646456	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs4646457	0.80[JPT][hapmap]
rs4646458	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs58024720	0.84[EUR][1000 genomes]
rs58222677	0.84[EUR][1000 genomes]
rs59986060	0.84[EUR][1000 genomes]
rs60865030	0.92[EUR][1000 genomes]
rs61159815	0.84[EUR][1000 genomes]
rs61337492	0.92[EUR][1000 genomes]
rs61402640	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61543997	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6961634	0.93[JPT][hapmap]
rs6962772	0.87[JPT][hapmap]
rs72494451	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72494452	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72494453	0.92[EUR][1000 genomes]
rs72494454	0.92[EUR][1000 genomes]
rs776741	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs7794705	0.88[JPT][hapmap]
rs7808022	0.80[JPT][hapmap]
rs868564	0.89[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs917154	0.87[JPT][hapmap]
rs940336	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99197800-99203800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:99198400-99213800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:99199800-99214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:99202400-99209400	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:99203600-99205400	Enhancers	HepG2	liver

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