Variant report

Variant	rs72494452
Chromosome Location	chr7:99193485-99193486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr7:99193341-99193662	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99192869..99194724-chr7:99199487..99201035,2	K562	blood:
2	chr7:99154821..99157182-chr7:99191213..99193976,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF498-1	chr7:99193064-99193565	predAs_ge08_CYP3A4_1

Variant related genes	Relation type
ENSG00000244219	TF binding region
ENSG00000221909	Chromatin interaction
ENSG00000272647	Chromatin interaction
ENSG00000197343	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1004387	0.83[EUR][1000 genomes]
rs1011024	0.85[ASN][1000 genomes]
rs10225314	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10238965	0.80[ASN][1000 genomes]
rs10240199	0.96[ASN][1000 genomes]
rs10254729	0.86[ASN][1000 genomes]
rs10265385	0.95[ASN][1000 genomes]
rs10464604	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11539770	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12538826	0.85[ASN][1000 genomes]
rs17161698	1.00[EUR][1000 genomes]
rs17161766	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17161768	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161769	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161771	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17161772	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17161774	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161780	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161783	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1851427	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1985453	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2057906	1.00[EUR][1000 genomes]
rs2240385	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2269985	1.00[EUR][1000 genomes]
rs2404322	1.00[EUR][1000 genomes]
rs34777615	0.88[ASN][1000 genomes]
rs3764815	1.00[EUR][1000 genomes]
rs3800960	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823812	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45442295	0.92[EUR][1000 genomes]
rs45492098	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs45540134	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs45600842	0.92[EUR][1000 genomes]
rs45622743	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4646446	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646447	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646449	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646453	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646456	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58024720	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58222677	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59986060	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60301933	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs60865030	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61159815	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61337492	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61402640	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61543997	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72494451	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494453	0.92[EUR][1000 genomes]
rs72494454	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs940336	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2554756	chr7:99182537-99196388	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv824230	chr7:99190617-99194457	Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv821509	chr7:99190617-99194715	Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3406454	chr7:99191016-99195714	Active TSS Genic enhancers Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv824232	chr7:99191881-99194715	Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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