Variant report

Variant	rs10254729
Chromosome Location	chr7:99196428-99196429
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99193891..99196715-chr7:99214150..99216733,2	K562	blood:
2	chr7:99196211..99197734-chr7:99197881..99200752,2	K562	blood:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1011024	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10211	0.83[JPT][hapmap]
rs10225314	0.93[JPT][hapmap]
rs10238965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10240199	0.87[ASN][1000 genomes]
rs10242455	0.83[JPT][hapmap]
rs10244158	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10253937	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10265385	0.83[ASN][1000 genomes]
rs10271049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10271582	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10279308	0.91[CEU][hapmap]
rs10282706	0.83[JPT][hapmap]
rs1043466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11772470	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11976018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12360	0.84[JPT][hapmap]
rs13227795	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13240600	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13437771	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1357319	0.83[JPT][hapmap]
rs15524	0.83[JPT][hapmap]
rs17161768	0.86[ASN][1000 genomes]
rs17161769	0.86[ASN][1000 genomes]
rs1859690	0.83[JPT][hapmap]
rs1879859	0.84[JPT][hapmap]
rs1980307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2003499	0.91[CEU][hapmap]
rs2037498	0.84[JPT][hapmap]
rs2037499	0.84[JPT][hapmap]
rs2072181	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs2222411	0.84[JPT][hapmap]
rs2240384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2240385	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2257401	0.84[JPT][hapmap]
rs2272168	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2280601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2404324	0.85[EUR][1000 genomes]
rs2404770	0.83[JPT][hapmap]
rs2687076	0.84[JPT][hapmap]
rs2687079	0.84[JPT][hapmap]
rs2687081	0.83[JPT][hapmap]
rs2687086	0.89[JPT][hapmap]
rs2687087	0.84[JPT][hapmap]
rs2687133	0.84[JPT][hapmap]
rs2687134	0.83[JPT][hapmap]
rs2687136	0.84[JPT][hapmap]
rs2687139	0.83[JPT][hapmap]
rs2687140	0.83[JPT][hapmap]
rs2687142	0.83[JPT][hapmap]
rs2687144	0.84[JPT][hapmap]
rs2687145	0.84[JPT][hapmap]
rs2740561	0.87[JPT][hapmap]
rs2740565	0.84[JPT][hapmap]
rs28457808	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34777615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3735453	0.84[JPT][hapmap]
rs3779354	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3800960	0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3843540	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3901286	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646450	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs4646457	0.83[JPT][hapmap]
rs6465750	0.84[JPT][hapmap]
rs6943920	0.92[CEU][hapmap]
rs6961634	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6962772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72494451	0.86[ASN][1000 genomes]
rs72494452	0.86[ASN][1000 genomes]
rs776746	0.84[JPT][hapmap]
rs7794682	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7794705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7804551	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7808022	0.83[JPT][hapmap]
rs868564	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs883403	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs917154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs940336	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs952319	0.83[CEU][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99194200-99197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:99195600-99196600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:99195600-99196600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:99195600-99196600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr7:99195600-99196600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr7:99195800-99198000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:99196000-99196600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:99196400-99196600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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