Variant report

Variant	rs17161768
Chromosome Location	chr7:99177877-99177878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99127768..99130966-chr7:99177146..99180116,3	K562	blood:
2	chr7:99171149..99174284-chr7:99174652..99178986,6	K562	blood:
3	chr7:99177795..99179645-chr7:99180925..99183844,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1004387	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1011024	0.85[ASN][1000 genomes]
rs10211	0.82[JPT][hapmap]
rs10225314	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10238965	0.85[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10240199	0.96[ASN][1000 genomes]
rs10242455	0.83[JPT][hapmap]
rs10254729	0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs10265385	0.95[ASN][1000 genomes]
rs10271049	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs10279308	0.94[YRI][hapmap]
rs10282706	0.82[JPT][hapmap]
rs1043466	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs10464604	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11539770	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11772470	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs11976018	0.86[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap]
rs12360	0.82[JPT][hapmap]
rs12538826	0.85[ASN][1000 genomes]
rs13240600	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1357319	0.82[JPT][hapmap]
rs1419745	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs15524	0.83[JPT][hapmap]
rs17161698	1.00[EUR][1000 genomes]
rs17161766	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17161769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161771	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17161772	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17161774	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161780	1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.93[MKK][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161783	0.82[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1851427	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1859690	0.83[JPT][hapmap]
rs1879859	0.82[JPT][hapmap]
rs1980307	0.85[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs1985453	1.00[ASW][hapmap];0.82[LWK][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2003499	0.94[YRI][hapmap]
rs2037498	0.82[JPT][hapmap]
rs2037499	0.82[JPT][hapmap]
rs2057906	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2222411	0.82[JPT][hapmap]
rs2240384	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs2240385	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2257401	0.82[JPT][hapmap]
rs2269985	1.00[CEU][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2272168	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2280600	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs2280601	0.86[CHB][hapmap];0.87[CHD][hapmap]
rs2404322	1.00[EUR][1000 genomes]
rs2404770	0.82[JPT][hapmap]
rs2687076	0.82[JPT][hapmap]
rs2687079	0.82[JPT][hapmap]
rs2687081	0.82[JPT][hapmap]
rs2687086	0.88[JPT][hapmap]
rs2687087	0.82[JPT][hapmap]
rs2687133	0.82[JPT][hapmap]
rs2687134	0.81[JPT][hapmap]
rs2687136	0.82[JPT][hapmap]
rs2687139	0.82[JPT][hapmap]
rs2687140	0.81[JPT][hapmap]
rs2687142	0.81[JPT][hapmap]
rs2687144	0.82[JPT][hapmap]
rs2687145	0.82[JPT][hapmap]
rs2740565	0.82[JPT][hapmap]
rs3137	0.86[CHB][hapmap]
rs34777615	0.88[ASN][1000 genomes]
rs3735453	0.82[JPT][hapmap]
rs3764815	1.00[CEU][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs3779354	0.90[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.84[JPT][hapmap]
rs3800960	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823812	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3843540	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs45442295	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45492098	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs45540134	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs45600842	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45622743	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4646446	0.82[ASW][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646447	0.82[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646449	0.82[ASW][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646453	0.82[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646456	0.82[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646457	0.83[JPT][hapmap]
rs4646458	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs58024720	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58222677	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59986060	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60301933	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60865030	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61159815	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61337492	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61402640	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61543997	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6465750	0.82[JPT][hapmap]
rs6961634	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs6962772	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs72494451	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494452	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494453	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72494454	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs776741	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs776746	0.82[JPT][hapmap]
rs7794705	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs7808022	0.83[JPT][hapmap]
rs8175345	0.82[ASW][hapmap]
rs868564	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs917154	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]
rs940336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17161768	BUD31	cis	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99175600-99178400	Weak transcription	K562	blood
2	chr7:99177200-99178600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr7:99177200-99178600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:99177200-99178600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:99177200-99178600	Active TSS	Brain Angular Gyrus	brain
6	chr7:99177400-99178000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:99177400-99178000	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr7:99177400-99178000	Flanking Active TSS	Thymus	Thymus
9	chr7:99177400-99178200	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr7:99177400-99178200	Flanking Active TSS	Lung	lung
11	chr7:99177400-99178400	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:99177400-99178400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr7:99177400-99178400	Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr7:99177400-99178400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:99177400-99178400	Active TSS	Aorta	Aorta
16	chr7:99177400-99178400	Active TSS	Right Atrium	heart
17	chr7:99177400-99178400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr7:99177400-99178400	Flanking Active TSS	HMEC	breast
19	chr7:99177400-99178400	Active TSS	HSMM	muscle
20	chr7:99177400-99178400	Flanking Active TSS	HUVEC	blood vessel
21	chr7:99177400-99178400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
22	chr7:99177400-99178400	Flanking Active TSS	NHEK	skin
23	chr7:99177400-99178600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:99177400-99178600	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr7:99177400-99178600	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr7:99177400-99178600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:99177400-99178600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:99177400-99178600	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr7:99177400-99178600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr7:99177400-99178600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr7:99177400-99178600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr7:99177400-99178600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr7:99177400-99178600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:99177400-99178600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:99177400-99178600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:99177400-99178600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr7:99177400-99178600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:99177400-99178600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:99177400-99178600	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr7:99177400-99178600	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr7:99177400-99178600	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr7:99177400-99178600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr7:99177400-99178600	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr7:99177400-99178600	Flanking Active TSS	Fetal Muscle Trunk	muscle
45	chr7:99177400-99178600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr7:99177400-99178600	Active TSS	Rectal Smooth Muscle	rectum
47	chr7:99177400-99178600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr7:99177400-99178800	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr7:99177600-99178000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:99177600-99178000	Flanking Active TSS	Pancreas	Pancrea

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