Variant report

Variant	rs10240199
Chromosome Location	chr7:99197178-99197179
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99196211..99197734-chr7:99197881..99200752,2	K562	blood:

rs_ID	r²[population]
rs1011024	0.89[ASN][1000 genomes]
rs10215765	0.83[EUR][1000 genomes]
rs10225314	0.89[ASN][1000 genomes]
rs10226310	0.81[EUR][1000 genomes]
rs10230784	0.81[EUR][1000 genomes]
rs10235235	0.86[EUR][1000 genomes]
rs10238965	0.81[ASN][1000 genomes]
rs10254729	0.87[ASN][1000 genomes]
rs10265385	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10273424	0.86[EUR][1000 genomes]
rs10464604	0.82[ASN][1000 genomes]
rs10808111	0.86[EUR][1000 genomes]
rs11539770	0.82[ASN][1000 genomes]
rs11555142	0.86[EUR][1000 genomes]
rs11761528	0.81[EUR][1000 genomes]
rs11766423	0.83[EUR][1000 genomes]
rs11973801	0.83[EUR][1000 genomes]
rs12535424	0.86[EUR][1000 genomes]
rs12538826	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13243267	0.86[EUR][1000 genomes]
rs17161761	0.86[EUR][1000 genomes]
rs17161766	0.84[ASN][1000 genomes]
rs17161768	0.96[ASN][1000 genomes]
rs17161769	0.96[ASN][1000 genomes]
rs17161771	0.91[ASN][1000 genomes]
rs17161772	0.90[ASN][1000 genomes]
rs2240385	0.82[ASN][1000 genomes]
rs34777615	0.88[ASN][1000 genomes]
rs35183025	0.86[EUR][1000 genomes]
rs36104094	0.86[EUR][1000 genomes]
rs3800960	0.93[ASN][1000 genomes]
rs45540134	0.83[ASN][1000 genomes]
rs45618033	0.83[EUR][1000 genomes]
rs45622743	0.80[ASN][1000 genomes]
rs58222677	0.81[ASN][1000 genomes]
rs58964157	0.86[EUR][1000 genomes]
rs60301933	0.85[ASN][1000 genomes]
rs61159815	0.83[ASN][1000 genomes]
rs61402640	0.87[ASN][1000 genomes]
rs61543997	0.87[ASN][1000 genomes]
rs6947826	0.86[EUR][1000 genomes]
rs6947941	0.86[EUR][1000 genomes]
rs6947974	0.86[EUR][1000 genomes]
rs6955891	0.82[EUR][1000 genomes]
rs72494451	0.96[ASN][1000 genomes]
rs72494452	0.96[ASN][1000 genomes]
rs868564	0.81[ASN][1000 genomes]
rs940336	0.82[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs10240199	ARPC1B	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99194200-99197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:99195800-99198000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:99196600-99199400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:99196600-99199400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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