Variant report

Variant	rs10273424
Chromosome Location	chr7:99196073-99196074
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99193891..99196715-chr7:99214150..99216733,2	K562	blood:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10215765	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229886	1.00[ASN][1000 genomes]
rs10230784	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236240	1.00[ASN][1000 genomes]
rs10240199	0.86[EUR][1000 genomes]
rs10264505	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265385	0.86[EUR][1000 genomes]
rs10268984	1.00[ASN][1000 genomes]
rs10275381	1.00[ASN][1000 genomes]
rs10277447	1.00[ASN][1000 genomes]
rs10808111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953288	1.00[ASN][1000 genomes]
rs10953289	1.00[ASN][1000 genomes]
rs11555142	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761528	1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766423	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971640	1.00[ASN][1000 genomes]
rs11973173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974593	1.00[ASN][1000 genomes]
rs11980995	1.00[ASN][1000 genomes]
rs11980999	1.00[ASN][1000 genomes]
rs11983474	1.00[ASN][1000 genomes]
rs12531852	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12533251	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536002	1.00[ASN][1000 genomes]
rs13223272	1.00[ASN][1000 genomes]
rs13227522	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240600	0.89[CEU][hapmap]
rs13243267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003498	1.00[ASN][1000 genomes]
rs28371764	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28419687	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28602855	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627543	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28862110	1.00[CEU][hapmap]
rs28988579	1.00[ASN][1000 genomes]
rs34096782	1.00[ASN][1000 genomes]
rs34111611	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34257469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34868357	1.00[ASN][1000 genomes]
rs34967184	1.00[ASN][1000 genomes]
rs35183025	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35296070	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs36104094	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45618033	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472667	1.00[ASN][1000 genomes]
rs4765	1.00[ASN][1000 genomes]
rs487813	1.00[ASN][1000 genomes]
rs501275	1.00[ASN][1000 genomes]
rs523407	1.00[ASN][1000 genomes]
rs545400	1.00[ASN][1000 genomes]
rs549061	1.00[ASN][1000 genomes]
rs558002	1.00[ASN][1000 genomes]
rs558112	1.00[ASN][1000 genomes]
rs568859	1.00[ASN][1000 genomes]
rs579424	1.00[ASN][1000 genomes]
rs57980352	1.00[ASN][1000 genomes]
rs585071	1.00[ASN][1000 genomes]
rs58964157	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60577432	1.00[ASN][1000 genomes]
rs620020	1.00[ASN][1000 genomes]
rs641761	1.00[ASN][1000 genomes]
rs642761	1.00[ASN][1000 genomes]
rs660629	1.00[ASN][1000 genomes]
rs66509940	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667660	1.00[ASN][1000 genomes]
rs671673	1.00[ASN][1000 genomes]
rs678040	1.00[ASN][1000 genomes]
rs679320	1.00[ASN][1000 genomes]
rs687134	1.00[ASN][1000 genomes]
rs688926	1.00[ASN][1000 genomes]
rs6947826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955891	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960775	1.00[ASN][1000 genomes]
rs6960810	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs704798	1.00[ASN][1000 genomes]
rs73163169	1.00[ASN][1000 genomes]
rs7778859	1.00[ASN][1000 genomes]
rs800667	1.00[ASN][1000 genomes]
rs800673	1.00[ASN][1000 genomes]
rs9632722	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656060	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2554756	chr7:99182537-99196388	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10273424	GS1-259H13.2	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99194200-99197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:99195600-99196400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:99195600-99196600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:99195600-99196600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:99195600-99196600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr7:99195600-99196600	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr7:99195800-99196200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:99195800-99196200	Bivalent Enhancer	Lung	lung
9	chr7:99195800-99198000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:99196000-99196600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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