Variant report

Variant	rs34111611
Chromosome Location	chr7:99095777-99095778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99091519..99093818-chr7:99094601..99096196,2	K562	blood:
2	chr7:99055033..99067556-chr7:99095016..99105645,21	K562	blood:
3	chr7:99034906..99037926-chr7:99095119..99098935,4	K562	blood:
4	chr7:99068844..99070718-chr7:99094622..99097601,3	MCF-7	breast:
5	chr7:99063380..99066123-chr7:99095103..99099037,3	MCF-7	breast:
6	chr7:99004301..99006264-chr7:99095120..99098080,2	MCF-7	breast:
7	chr7:99093125..99095792-chr7:99099827..99103934,4	MCF-7	breast:
8	chr7:99094587..99100534-chr7:99152995..99157420,10	K562	blood:
9	chr7:99068931..99071829-chr7:99093841..99095916,3	K562	blood:
10	chr7:99094587..99099514-chr7:99154661..99157582,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106246	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000272647	Chromatin interaction
ENSG00000197343	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000198556	Chromatin interaction
ENSG00000241468	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10215765	1.00[ASN][1000 genomes]
rs10215854	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10226310	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10229886	1.00[ASN][1000 genomes]
rs10230784	1.00[ASN][1000 genomes]
rs10235235	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10236240	1.00[ASN][1000 genomes]
rs10264505	1.00[ASN][1000 genomes]
rs10268984	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10273424	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10275381	1.00[ASN][1000 genomes]
rs10277447	1.00[ASN][1000 genomes]
rs10808111	1.00[CHB][hapmap]
rs10808112	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10953288	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10953289	1.00[ASN][1000 genomes]
rs11555142	1.00[ASN][1000 genomes]
rs11761528	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11766423	1.00[ASN][1000 genomes]
rs11971640	1.00[ASN][1000 genomes]
rs11973173	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11973801	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11974593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11978345	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11978582	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11980995	1.00[ASN][1000 genomes]
rs11980999	1.00[ASN][1000 genomes]
rs11983474	1.00[ASN][1000 genomes]
rs12531852	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12533251	1.00[ASN][1000 genomes]
rs12535424	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12536002	1.00[ASN][1000 genomes]
rs12539480	1.00[ASN][1000 genomes]
rs13223272	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227522	1.00[ASN][1000 genomes]
rs13243267	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17161687	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17161761	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2003498	1.00[ASN][1000 genomes]
rs28371764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs28419687	1.00[ASN][1000 genomes]
rs28602855	1.00[ASN][1000 genomes]
rs28627543	1.00[ASN][1000 genomes]
rs34096782	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34257469	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34967184	1.00[ASN][1000 genomes]
rs35183025	1.00[ASN][1000 genomes]
rs35296070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35656351	1.00[ASN][1000 genomes]
rs36104094	1.00[ASN][1000 genomes]
rs45618033	1.00[ASN][1000 genomes]
rs4765	1.00[ASN][1000 genomes]
rs57980352	1.00[ASN][1000 genomes]
rs58964157	1.00[ASN][1000 genomes]
rs60577432	1.00[ASN][1000 genomes]
rs61740607	1.00[ASN][1000 genomes]
rs66478766	1.00[ASN][1000 genomes]
rs66509940	1.00[ASN][1000 genomes]
rs66568021	1.00[ASN][1000 genomes]
rs66674233	1.00[ASN][1000 genomes]
rs67546174	1.00[ASN][1000 genomes]
rs67909852	1.00[ASN][1000 genomes]
rs67934834	1.00[ASN][1000 genomes]
rs6947826	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6947941	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6947974	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955891	1.00[ASN][1000 genomes]
rs6960810	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs704798	1.00[ASN][1000 genomes]
rs73159506	1.00[ASN][1000 genomes]
rs73159509	1.00[ASN][1000 genomes]
rs73159522	1.00[ASN][1000 genomes]
rs73163167	1.00[ASN][1000 genomes]
rs73163169	1.00[ASN][1000 genomes]
rs740160	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7778859	1.00[ASN][1000 genomes]
rs9632722	1.00[ASN][1000 genomes]
rs9656060	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99071400-99096200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99092200-99095800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:99092200-99095800	Weak transcription	Right Atrium	heart
4	chr7:99092200-99096200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:99092200-99096200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:99092400-99096200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:99092600-99096200	Weak transcription	Aorta	Aorta
8	chr7:99092600-99096200	Strong transcription	Fetal Muscle Trunk	muscle
9	chr7:99093400-99095800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:99094000-99095800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:99094200-99095800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:99094200-99096000	Weak transcription	Esophagus	oesophagus
13	chr7:99094200-99096200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:99094400-99095800	Strong transcription	Fetal Muscle Leg	muscle
15	chr7:99094600-99095800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:99094600-99096000	Weak transcription	Pancreas	Pancrea
17	chr7:99094600-99096000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:99094800-99095800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:99095000-99095800	Enhancers	Primary hematopoietic stem cells	blood
20	chr7:99095000-99097600	Transcr. at gene 5' and 3'	Dnd41	blood
21	chr7:99095000-99098400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:99095200-99095800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:99095200-99095800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:99095200-99095800	Genic enhancers	Brain Anterior Caudate	brain
25	chr7:99095200-99095800	Enhancers	Brain Hippocampus Middle	brain
26	chr7:99095200-99095800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:99095200-99095800	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
28	chr7:99095200-99095800	Genic enhancers	Fetal Thymus	thymus
29	chr7:99095200-99095800	Genic enhancers	Ovary	ovary
30	chr7:99095200-99095800	Enhancers	Psoas Muscle	Psoas
31	chr7:99095200-99095800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
32	chr7:99095200-99095800	Genic enhancers	NHEK	skin
33	chr7:99095200-99096000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
34	chr7:99095200-99096000	Genic enhancers	Brain Substantia Nigra	brain
35	chr7:99095200-99096000	Enhancers	Gastric	stomach
36	chr7:99095200-99096000	Genic enhancers	Lung	lung
37	chr7:99095200-99096000	Genic enhancers	Stomach Mucosa	stomach
38	chr7:99095200-99096200	Genic enhancers	Primary monocytes fromperipheralblood	blood
39	chr7:99095200-99096200	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr7:99095200-99096200	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr7:99095200-99096200	Genic enhancers	Left Ventricle	heart
42	chr7:99095200-99096200	Enhancers	Small Intestine	intestine
43	chr7:99095200-99096400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:99095200-99096400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
45	chr7:99095200-99096400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:99095200-99096400	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
47	chr7:99095200-99096600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
48	chr7:99095200-99096600	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
49	chr7:99095200-99096600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
50	chr7:99095200-99096600	Transcr. at gene 5' and 3'	K562	blood

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