Variant report

Variant	rs17161761
Chromosome Location	chr7:99156934-99156935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:99155378-99156994	K562	blood:	n/a	n/a
2	POLR2A	chr7:99155377-99156965	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr7:99155537-99156940	MCF10A-Er-Src	breast:	n/a	n/a
4	HEY1	chr7:99155325-99157387	K562	blood:	n/a	n/a
5	YY1	chr7:99155425-99157090	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr7:99155365-99156953	GM12891	blood:	n/a	n/a
7	MAX	chr7:99155518-99156973	NB4	blood:	n/a	chr7:99156770-99156780
8	RUNX3	chr7:99155677-99157047	GM12878	blood:	n/a	n/a
9	ZNF263	chr7:99155633-99157133	HEK293-T-REx	kidney:	n/a	chr7:99156695-99156704
10	STAT3	chr7:99156687-99157044	MCF10A-Er-Src	breast:	n/a	chr7:99156864-99156873 chr7:99156859-99156879 chr7:99156865-99156873 chr7:99156859-99156879 chr7:99156863-99156874 chr7:99156865-99156874
11	MYC	chr7:99155585-99157138	K562	blood:	n/a	chr7:99156770-99156780
12	POLR2A	chr7:99155481-99156974	HL-60	blood:	n/a	n/a
13	ELF1	chr7:99155622-99157221	GM12878	blood:	n/a	n/a
14	STAT5A	chr7:99156877-99157133	GM12878	blood:	n/a	n/a
15	POLR2A	chr7:99154519-99157060	GM12892	blood:	n/a	n/a
16	UBTF	chr7:99155518-99157006	K562	blood:	n/a	n/a
17	POLR2A	chr7:99154516-99157097	GM12892	blood:	n/a	n/a
18	MAX	chr7:99155492-99157130	A549	lung:	n/a	chr7:99156770-99156780
19	TAF1	chr7:99155700-99157002	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr7:99155462-99156970	GM12878	blood:	n/a	n/a
21	MYC	chr7:99155899-99156965	MCF10A-Er-Src	breast:	n/a	chr7:99156770-99156780
22	MAX	chr7:99155657-99156952	ECC-1	luminal epithelium:	n/a	chr7:99156770-99156780
23	MAZ	chr7:99155673-99156973	K562	blood:	n/a	chr7:99156770-99156780
24	POLR2A	chr7:99155332-99157045	K562	blood:	n/a	n/a
25	PML	chr7:99154858-99157037	K562	blood:	n/a	n/a
26	E2F6	chr7:99155648-99156935	A549	lung:	n/a	chr7:99155798-99155808
27	YY1	chr7:99156820-99157183	GM12892	blood:	n/a	n/a
28	POLR2A	chr7:99155427-99157128	GM12878	blood:	n/a	n/a
29	RUNX3	chr7:99155631-99156994	GM12878	blood:	n/a	n/a
30	TEAD4	chr7:99154680-99157488	K562	blood:	n/a	n/a
31	POLR2A	chr7:99155490-99156971	GM12878	blood:	n/a	n/a
32	MAX	chr7:99155699-99157003	H1-hESC	embryonic stem cell:	n/a	chr7:99156770-99156780
33	TCF12	chr7:99155672-99157060	ECC-1	luminal epithelium:	n/a	n/a
34	POLR2A	chr7:99155541-99156976	GM12892	blood:	n/a	n/a
35	TCF12	chr7:99155601-99156965	ECC-1	luminal epithelium:	n/a	n/a
36	SPI1	chr7:99155630-99157070	GM12878	blood:	n/a	chr7:99156684-99156697
37	GABPA	chr7:99155453-99156970	A549	lung:	n/a	n/a
38	GABPA	chr7:99155476-99156973	SK-N-SH	brain:	n/a	n/a
39	MYC	chr7:99155508-99157056	NB4	blood:	n/a	chr7:99156770-99156780
40	POLR2A	chr7:99155637-99156941	K562	blood:	n/a	n/a
41	REST	chr7:99155150-99157243	H1-neurons	neurons:	n/a	n/a
42	SIN3A	chr7:99155447-99157397	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr7:99155673-99156969	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr7:99155449-99156942	H1-neurons	neurons:	n/a	n/a
45	POLR2A	chr7:99155571-99156957	GM12878	blood:	n/a	n/a
46	STAT3	chr7:99156759-99157002	MCF10A-Er-Src	breast:	n/a	chr7:99156864-99156873 chr7:99156859-99156879 chr7:99156865-99156873 chr7:99156859-99156879 chr7:99156863-99156874 chr7:99156865-99156874
47	NR2F2	chr7:99154843-99157571	K562	blood:	n/a	n/a
48	STAT5A	chr7:99155453-99156964	GM12878	blood:	n/a	chr7:99156864-99156873 chr7:99156859-99156879 chr7:99156865-99156873 chr7:99156859-99156879 chr7:99155597-99155609 chr7:99155726-99155738 chr7:99156865-99156874
49	TEAD4	chr7:99156894-99157646	K562	blood:	n/a	n/a
50	MAX	chr7:99155659-99156968	H1-hESC	embryonic stem cell:	n/a	chr7:99156770-99156780

No.	Distal block	Cell Line	Cell type
1	chr7:99006486..99009069-chr7:99155267..99158163,2	K562	blood:
2	chr7:99101331..99104822-chr7:99153806..99158131,11	K562	blood:
3	chr7:99094587..99099514-chr7:99154661..99157582,5	K562	blood:
4	chr7:99005603..99007986-chr7:99155532..99158163,2	K562	blood:
5	chr11:2430380..2430993-chr7:99156681..99157360,2	HCT-116	colon:
6	chr7:99153240..99158172-chr7:99212624..99218049,13	K562	blood:
7	chr7:99094587..99100534-chr7:99152995..99157420,10	K562	blood:
8	chr7:99068908..99072651-chr7:99154750..99158224,8	K562	blood:
9	chr7:99154927..99157797-chr7:99646384..99648528,2	K562	blood:
10	chr7:99101000..99104995-chr7:99153806..99158171,7	K562	blood:
11	chr7:99096384..99098728-chr7:99154731..99157565,2	MCF-7	breast:
12	chr7:99156838..99159123-chr7:99587844..99590431,2	K562	blood:
13	chr7:99148330..99152549-chr7:99153303..99160203,7	MCF-7	breast:
14	chr7:99068023..99071798-chr7:99154715..99160193,6	K562	blood:
15	chr7:99155790..99158631-chr7:99212983..99215798,6	K562	blood:
16	chr7:99154663..99157648-chr7:99258389..99261755,3	K562	blood:

Variant related genes	Relation type
FAM200A	TF binding region
ENSG00000198556	Chromatin interaction
ENSG00000235713	Chromatin interaction
ENSG00000160908	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000106258	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000166529	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10215765	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215854	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229886	1.00[ASN][1000 genomes]
rs10230784	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235235	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236240	1.00[ASN][1000 genomes]
rs10240199	0.86[EUR][1000 genomes]
rs10264505	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265385	0.86[EUR][1000 genomes]
rs10268984	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10273424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275381	1.00[ASN][1000 genomes]
rs10277447	1.00[ASN][1000 genomes]
rs10808111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808112	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953288	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10953289	1.00[ASN][1000 genomes]
rs11555142	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761528	1.00[CHB][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766423	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971640	1.00[ASN][1000 genomes]
rs11973173	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973801	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11978345	1.00[ASN][1000 genomes]
rs11980995	1.00[ASN][1000 genomes]
rs11980999	1.00[ASN][1000 genomes]
rs11983474	1.00[ASN][1000 genomes]
rs12531852	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12533251	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536002	1.00[ASN][1000 genomes]
rs12539480	1.00[ASN][1000 genomes]
rs13223272	1.00[ASN][1000 genomes]
rs13227522	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243267	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161687	1.00[ASN][1000 genomes]
rs2003498	1.00[ASN][1000 genomes]
rs28371764	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28419687	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28602855	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627543	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28862110	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs28988579	1.00[ASN][1000 genomes]
rs34096782	1.00[ASN][1000 genomes]
rs34111611	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34257469	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34967184	1.00[ASN][1000 genomes]
rs35183025	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35296070	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35656351	1.00[ASN][1000 genomes]
rs36104094	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45618033	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4765	1.00[ASN][1000 genomes]
rs57980352	1.00[ASN][1000 genomes]
rs58964157	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60577432	1.00[ASN][1000 genomes]
rs66509940	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66568021	1.00[ASN][1000 genomes]
rs67546174	1.00[ASN][1000 genomes]
rs67909852	1.00[ASN][1000 genomes]
rs6947826	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955891	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960810	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs704798	1.00[ASN][1000 genomes]
rs73163167	1.00[ASN][1000 genomes]
rs73163169	1.00[ASN][1000 genomes]
rs740160	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7778859	1.00[ASN][1000 genomes]
rs9632722	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656060	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17161761	GS1-259H13.2	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99154800-99157400	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr7:99154800-99157600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr7:99154800-99157600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr7:99154800-99157800	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr7:99154800-99157800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr7:99154800-99158200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:99155000-99157200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr7:99155000-99157200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:99155000-99157200	Active TSS	Pancreas	Pancrea
10	chr7:99155000-99157400	Active TSS	Psoas Muscle	Psoas
11	chr7:99155000-99157600	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr7:99155000-99157600	Active TSS	Right Atrium	heart
13	chr7:99155000-99158000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:99155200-99157200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:99155200-99157200	Active TSS	Colonic Mucosa	Colon
16	chr7:99155200-99157200	Active TSS	Fetal Intestine Large	intestine
17	chr7:99155200-99157400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:99155200-99157400	Active TSS	Muscle Satellite Cultured Cells	--
19	chr7:99155200-99157400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:99155200-99157600	Active TSS	H9 Cell Line	embryonic stem cell
21	chr7:99155200-99157600	Active TSS	HSMM	muscle
22	chr7:99155200-99157600	Active TSS	HSMMtube	muscle
23	chr7:99155200-99157600	Active TSS	NHDF-Ad	bronchial
24	chr7:99155200-99157800	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr7:99155200-99157800	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr7:99155200-99157800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:99155200-99157800	Active TSS	NHLF	lung
28	chr7:99155200-99158000	Active TSS	A549	lung
29	chr7:99155200-99158000	Active TSS	GM12878-XiMat	blood
30	chr7:99155200-99158200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:99155400-99157000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:99155400-99157000	Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr7:99155400-99157000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:99155400-99157000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:99155400-99157000	Active TSS	Brain Anterior Caudate	brain
36	chr7:99155400-99157000	Active TSS	Brain Substantia Nigra	brain
37	chr7:99155400-99157000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr7:99155400-99157000	Active TSS	Fetal Muscle Leg	muscle
39	chr7:99155400-99157000	Active TSS	Fetal Thymus	thymus
40	chr7:99155400-99157000	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr7:99155400-99157000	Active TSS	Spleen	Spleen
42	chr7:99155400-99157200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:99155400-99157200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr7:99155400-99157200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr7:99155400-99157200	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr7:99155400-99157200	Active TSS	Aorta	Aorta
47	chr7:99155400-99157200	Active TSS	Brain Angular Gyrus	brain
48	chr7:99155400-99157200	Active TSS	Brain Hippocampus Middle	brain
49	chr7:99155400-99157200	Active TSS	Colon Smooth Muscle	Colon
50	chr7:99155400-99157200	Active TSS	Duodenum Smooth Muscle	Duodenum

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