Variant report

Variant	rs10265385
Chromosome Location	chr7:99162687-99162688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99128290..99131980-chr7:99159807..99163198,3	K562	blood:
2	chr7:99054140..99056503-chr7:99161900..99164159,2	K562	blood:
3	chr7:99159942..99162931-chr7:99212527..99214599,4	MCF-7	breast:
4	chr7:99075804..99077821-chr7:99161750..99163341,2	K562	blood:
5	chr7:98959759..98962348-chr7:99161830..99163868,2	K562	blood:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction
ENSG00000197037	Chromatin interaction

rs_ID	r²[population]
rs1011024	0.82[ASN][1000 genomes]
rs10215765	0.83[EUR][1000 genomes]
rs10225314	0.85[ASN][1000 genomes]
rs10226310	0.81[EUR][1000 genomes]
rs10230784	0.81[EUR][1000 genomes]
rs10235235	0.86[EUR][1000 genomes]
rs10238965	0.83[ASN][1000 genomes]
rs10240199	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10254729	0.83[ASN][1000 genomes]
rs10273424	0.86[EUR][1000 genomes]
rs10464604	0.84[ASN][1000 genomes]
rs10808111	0.86[EUR][1000 genomes]
rs11539770	0.84[ASN][1000 genomes]
rs11555142	0.86[EUR][1000 genomes]
rs11761528	0.81[EUR][1000 genomes]
rs11766423	0.83[EUR][1000 genomes]
rs11973801	0.83[EUR][1000 genomes]
rs11976018	0.81[ASN][1000 genomes]
rs12535424	0.86[EUR][1000 genomes]
rs12538826	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13243267	0.86[EUR][1000 genomes]
rs17161761	0.86[EUR][1000 genomes]
rs17161766	0.83[ASN][1000 genomes]
rs17161768	0.95[ASN][1000 genomes]
rs17161769	0.95[ASN][1000 genomes]
rs17161771	0.87[ASN][1000 genomes]
rs17161772	0.85[ASN][1000 genomes]
rs2240385	0.84[ASN][1000 genomes]
rs3137	0.81[ASN][1000 genomes]
rs34777615	0.85[ASN][1000 genomes]
rs35183025	0.86[EUR][1000 genomes]
rs36104094	0.86[EUR][1000 genomes]
rs3800960	0.98[ASN][1000 genomes]
rs3843540	0.81[ASN][1000 genomes]
rs45492098	0.83[ASN][1000 genomes]
rs45540134	0.88[ASN][1000 genomes]
rs45618033	0.83[EUR][1000 genomes]
rs45622743	0.86[ASN][1000 genomes]
rs58222677	0.86[ASN][1000 genomes]
rs58964157	0.86[EUR][1000 genomes]
rs60301933	0.90[ASN][1000 genomes]
rs61159815	0.88[ASN][1000 genomes]
rs61402640	0.93[ASN][1000 genomes]
rs61543997	0.93[ASN][1000 genomes]
rs6947826	0.86[EUR][1000 genomes]
rs6947941	0.86[EUR][1000 genomes]
rs6947974	0.86[EUR][1000 genomes]
rs6955891	0.82[EUR][1000 genomes]
rs72494451	0.95[ASN][1000 genomes]
rs72494452	0.95[ASN][1000 genomes]
rs7804551	0.80[ASN][1000 genomes]
rs940336	0.84[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs10265385	ARPC1B	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99157400-99177400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:99157400-99177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:99157600-99164200	Weak transcription	Right Atrium	heart
4	chr7:99157800-99164800	Strong transcription	Primary T cells from cord blood	blood
5	chr7:99157800-99172200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:99157800-99172800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:99158000-99162800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:99158000-99162800	Strong transcription	Fetal Lung	lung
9	chr7:99158000-99164200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:99158000-99164400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:99158000-99164600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:99158000-99166800	Strong transcription	Fetal Stomach	stomach
13	chr7:99158200-99163400	Strong transcription	H9 Cell Line	embryonic stem cell
14	chr7:99158200-99163400	Strong transcription	Colonic Mucosa	Colon
15	chr7:99158200-99163800	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr7:99158200-99164200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:99158200-99166600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:99158200-99166800	Strong transcription	Primary hematopoietic stem cells	blood
19	chr7:99158200-99171400	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:99158200-99171800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:99158200-99172600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr7:99158200-99173000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:99158400-99162800	Strong transcription	Aorta	Aorta
24	chr7:99158400-99163200	Strong transcription	Spleen	Spleen
25	chr7:99158400-99163400	Strong transcription	Brain Angular Gyrus	brain
26	chr7:99158400-99163800	Strong transcription	Stomach Smooth Muscle	stomach
27	chr7:99158400-99164400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:99158400-99164400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr7:99158400-99164400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:99158400-99164400	Strong transcription	Fetal Brain Female	brain
31	chr7:99158400-99164400	Strong transcription	Right Ventricle	heart
32	chr7:99158400-99164600	Strong transcription	Fetal Muscle Leg	muscle
33	chr7:99158400-99164800	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr7:99158400-99165400	Strong transcription	Brain Germinal Matrix	brain
35	chr7:99158400-99166600	Strong transcription	Fetal Muscle Trunk	muscle
36	chr7:99158400-99166800	Strong transcription	Fetal Intestine Small	intestine
37	chr7:99158400-99171400	Strong transcription	Liver	Liver
38	chr7:99158400-99172000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr7:99158400-99172800	Strong transcription	Fetal Intestine Large	intestine
40	chr7:99158600-99164000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
41	chr7:99158600-99164400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:99158600-99164400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:99158600-99164600	Strong transcription	Left Ventricle	heart
44	chr7:99158600-99171800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr7:99158800-99164400	Strong transcription	Brain Hippocampus Middle	brain
46	chr7:99158800-99165400	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:99158800-99172800	Strong transcription	Primary B cells from cord blood	blood
48	chr7:99158800-99172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:99159000-99162800	Genic enhancers	HSMMtube	muscle
50	chr7:99159000-99164400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links