Variant report

Variant	rs1011024
Chromosome Location	chr7:99197401-99197402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99196211..99197734-chr7:99197881..99200752,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10211	0.83[JPT][hapmap]
rs10225314	0.93[JPT][hapmap]
rs10238965	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10240199	0.89[ASN][1000 genomes]
rs10242455	0.83[JPT][hapmap]
rs10244158	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10253937	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10254729	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10265385	0.82[ASN][1000 genomes]
rs10271049	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10271582	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10279308	0.84[CEU][hapmap]
rs10282706	0.83[JPT][hapmap]
rs1043466	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11772470	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11976018	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12360	0.84[JPT][hapmap]
rs13227795	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13240600	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13437771	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1357319	0.83[JPT][hapmap]
rs15524	0.83[JPT][hapmap]
rs17161768	0.85[ASN][1000 genomes]
rs17161769	0.85[ASN][1000 genomes]
rs17161771	0.81[ASN][1000 genomes]
rs1859690	0.83[JPT][hapmap]
rs1879859	0.84[JPT][hapmap]
rs1980307	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2003499	0.84[CEU][hapmap]
rs2037498	0.84[JPT][hapmap]
rs2037499	0.84[JPT][hapmap]
rs2072181	0.91[ASW][hapmap];0.92[CEU][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2222411	0.84[JPT][hapmap]
rs2240384	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2240385	0.81[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap]
rs2257401	0.84[JPT][hapmap]
rs2272168	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280600	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280601	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2404324	0.85[EUR][1000 genomes]
rs2404770	0.83[JPT][hapmap]
rs2687076	0.84[JPT][hapmap]
rs2687079	0.84[JPT][hapmap]
rs2687081	0.83[JPT][hapmap]
rs2687086	0.89[JPT][hapmap]
rs2687087	0.84[JPT][hapmap]
rs2687133	0.84[JPT][hapmap]
rs2687134	0.83[JPT][hapmap]
rs2687136	0.84[JPT][hapmap]
rs2687139	0.83[JPT][hapmap]
rs2687140	0.83[JPT][hapmap]
rs2687142	0.83[JPT][hapmap]
rs2687144	0.84[JPT][hapmap]
rs2687145	0.84[JPT][hapmap]
rs2740561	0.87[JPT][hapmap]
rs2740565	0.84[JPT][hapmap]
rs28457808	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3137	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34777615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3735453	0.84[JPT][hapmap]
rs3779354	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3800960	0.81[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs3843540	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3901286	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4646450	0.82[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes]
rs4646457	0.83[JPT][hapmap]
rs6465750	0.84[JPT][hapmap]
rs6943920	0.91[ASW][hapmap];0.92[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs6961634	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6962772	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72494451	0.85[ASN][1000 genomes]
rs72494452	0.85[ASN][1000 genomes]
rs776746	0.84[JPT][hapmap]
rs7794682	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7794705	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7804551	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7808022	0.83[JPT][hapmap]
rs868564	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs883403	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs917154	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs940336	0.81[CHB][hapmap];0.83[JPT][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1011024	ACTL6B	cis	cerebellum	SCAN
rs1011024	CPSF4	cis	parietal	SCAN
rs1011024	GATS	cis	parietal	SCAN
rs1011024	CYP3A5	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99194200-99197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:99195800-99198000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:99196600-99199400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:99196600-99199400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:99197400-99197600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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