Variant report

Variant	rs6961634
Chromosome Location	chr7:99181839-99181840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99177795..99179645-chr7:99180925..99183844,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1011024	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10211	0.83[JPT][hapmap]
rs10225314	0.93[JPT][hapmap]
rs10231948	0.81[YRI][hapmap]
rs10238965	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10240199	0.87[ASN][1000 genomes]
rs10242455	0.83[JPT][hapmap]
rs10243678	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs10244158	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10253937	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10254729	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265385	0.83[ASN][1000 genomes]
rs10271049	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10271582	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10282706	0.83[JPT][hapmap]
rs1043466	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11772470	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11976018	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12360	0.84[JPT][hapmap]
rs13227795	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13240600	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13437771	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1357319	0.83[JPT][hapmap]
rs15524	0.83[JPT][hapmap]
rs17161768	0.86[ASN][1000 genomes]
rs17161769	0.86[ASN][1000 genomes]
rs1859690	0.83[JPT][hapmap]
rs1879859	0.84[JPT][hapmap]
rs1980307	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2037498	0.84[JPT][hapmap]
rs2037499	0.84[JPT][hapmap]
rs2072181	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs2222411	0.84[JPT][hapmap]
rs2240384	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2240385	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2257401	0.84[JPT][hapmap]
rs2272168	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280600	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2280601	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2404770	0.83[JPT][hapmap]
rs2687076	0.84[JPT][hapmap]
rs2687079	0.84[JPT][hapmap]
rs2687081	0.83[JPT][hapmap]
rs2687086	0.89[JPT][hapmap]
rs2687087	0.84[JPT][hapmap]
rs2687133	0.84[JPT][hapmap]
rs2687134	0.83[JPT][hapmap]
rs2687136	0.84[JPT][hapmap]
rs2687139	0.83[JPT][hapmap]
rs2687140	0.83[JPT][hapmap]
rs2687142	0.83[JPT][hapmap]
rs2687144	0.84[JPT][hapmap]
rs2687145	0.84[JPT][hapmap]
rs2740561	0.87[JPT][hapmap]
rs2740565	0.84[JPT][hapmap]
rs28457808	0.82[ASN][1000 genomes]
rs3137	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34777615	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3735453	0.84[JPT][hapmap]
rs3779354	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3800960	0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3843540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3901286	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646457	0.83[JPT][hapmap]
rs6465750	0.84[JPT][hapmap]
rs6943920	0.84[CEU][hapmap]
rs6962772	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72494451	0.86[ASN][1000 genomes]
rs72494452	0.86[ASN][1000 genomes]
rs776746	0.84[JPT][hapmap]
rs7794682	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7794705	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7804551	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7808022	0.83[JPT][hapmap]
rs868564	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs883403	0.92[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs917154	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs940334	0.88[YRI][hapmap]
rs940336	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs952319	0.83[CEU][hapmap];0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6961634	ARPC1B	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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