Variant report

Variant	rs13437771
Chromosome Location	chr7:99071478-99071479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:99069928-99071829	GM12878	blood:	n/a	n/a
2	SPI1	chr7:99070681-99071553	GM12878	blood:	n/a	n/a
3	POLR2A	chr7:99067767-99071550	HepG2	liver:	n/a	n/a
4	POLR2A	chr7:99071220-99071549	GM12878	blood:	n/a	n/a
5	MXI1	chr7:99068709-99071482	SK-N-SH	brain:	n/a	n/a

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99068908..99072651-chr7:99154750..99158224,8	K562	blood:
2	chr7:99004812..99006640-chr7:99069621..99072318,3	K562	blood:
3	chr7:99068815..99072356-chr7:99100086..99103806,3	MCF-7	breast:
4	chr7:99062287..99065237-chr7:99068917..99072408,9	MCF-7	breast:
5	chr7:99034517..99037333-chr7:99070217..99072293,2	K562	blood:
6	chr7:99068023..99071798-chr7:99154715..99160193,6	K562	blood:
7	chr7:99070549..99074806-chr7:99079713..99086160,8	K562	blood:
8	chr7:99070395..99072664-chr7:99081646..99084913,3	MCF-7	breast:
9	chr7:99068972..99072429-chr7:99096212..99099578,8	K562	blood:
10	chr7:99069496..99072667-chr7:99072993..99076843,7	MCF-7	breast:
11	chr7:99070856..99073411-chr7:99081785..99084342,2	MCF-7	breast:
12	chr7:99057414..99059728-chr7:99070911..99072427,2	K562	blood:
13	chr7:99069267..99072037-chr7:99212964..99216446,4	MCF-7	breast:
14	chr7:99069546..99072504-chr7:99101462..99103609,2	MCF-7	breast:
15	chr7:99071113..99073146-chr7:99090531..99092211,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF789	TF binding region
ENSG00000160908	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000197343	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000241468	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000272647	Chromatin interaction
ENSG00000198556	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1011024	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10238965	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10244158	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10253937	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10254729	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10271049	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10271582	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1043466	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464604	0.81[ASN][1000 genomes]
rs11539770	0.81[ASN][1000 genomes]
rs11976018	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12538826	0.82[ASN][1000 genomes]
rs13227795	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240600	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980307	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240384	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2240385	0.81[ASN][1000 genomes]
rs2272168	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280600	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280601	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2404324	0.93[EUR][1000 genomes]
rs28457808	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3137	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34777615	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3779354	0.98[ASN][1000 genomes]
rs3843540	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3901286	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45492098	0.81[ASN][1000 genomes]
rs45540134	0.87[ASN][1000 genomes]
rs45622743	0.83[ASN][1000 genomes]
rs58222677	0.84[ASN][1000 genomes]
rs61159815	0.85[ASN][1000 genomes]
rs61402640	0.81[ASN][1000 genomes]
rs61543997	0.81[ASN][1000 genomes]
rs6962772	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7794682	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7794705	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7804551	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs883403	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs917154	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs940336	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99066800-99071600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:99066800-99071800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:99068800-99071600	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:99068800-99071600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:99068800-99072000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:99069000-99071600	Active TSS	H9 Cell Line	embryonic stem cell
7	chr7:99069000-99071600	Active TSS	A549	lung
8	chr7:99069000-99071800	Active TSS	H1 Cell Line	embryonic stem cell
9	chr7:99069000-99071800	Active TSS	Fetal Kidney	kidney
10	chr7:99069200-99071800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:99069400-99071600	Active TSS	HMEC	breast
12	chr7:99069600-99071600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:99069600-99071600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:99069600-99071600	Active TSS	Colonic Mucosa	Colon
15	chr7:99069600-99071800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:99069800-99071600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:99069800-99071600	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr7:99069800-99071600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:99069800-99071600	Active TSS	GM12878-XiMat	blood
20	chr7:99069800-99071800	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr7:99069800-99071800	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr7:99069800-99071800	Active TSS	HSMM	muscle
23	chr7:99069800-99071800	Active TSS	HSMMtube	muscle
24	chr7:99070600-99071800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:99070600-99071800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr7:99070800-99071600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:99070800-99071600	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr7:99070800-99071800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:99070800-99071800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr7:99071000-99071600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:99071000-99071600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr7:99071000-99071600	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr7:99071000-99071600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr7:99071000-99071600	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr7:99071000-99071800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:99071000-99071800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr7:99071000-99071800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:99071000-99071800	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr7:99071000-99071800	Flanking Active TSS	Fetal Brain Male	brain
40	chr7:99071000-99071800	Flanking Active TSS	Fetal Brain Female	brain
41	chr7:99071000-99071800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr7:99071000-99071800	Enhancers	Spleen	Spleen
43	chr7:99071000-99072000	Flanking Active TSS	Dnd41	blood
44	chr7:99071200-99071600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:99071200-99071600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr7:99071200-99071600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:99071200-99071600	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr7:99071200-99071600	Flanking Active TSS	Fetal Intestine Large	intestine
49	chr7:99071200-99071600	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr7:99071200-99071600	Flanking Active TSS	Left Ventricle	heart

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