Variant report

Variant	rs10253937
Chromosome Location	chr7:99154442-99154443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:99154406-99154810	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99101331..99104822-chr7:99153806..99158131,11	K562	blood:
2	chr7:99152023..99154622-chr7:99213890..99215526,2	MCF-7	breast:
3	chr7:99060444..99064436-chr7:99153650..99156512,4	K562	blood:
4	chr7:99132981..99135156-chr7:99152620..99155235,2	K562	blood:
5	chr7:99153240..99158172-chr7:99212624..99218049,13	K562	blood:
6	chr7:99094587..99100534-chr7:99152995..99157420,10	K562	blood:
7	chr7:99101000..99104995-chr7:99153806..99158171,7	K562	blood:
8	chr7:99148330..99152549-chr7:99153303..99160203,7	MCF-7	breast:
9	chr7:99038287..99041727-chr7:99152286..99154595,3	K562	blood:

No data

Variant related genes	Relation type
FAM200A	TF binding region
ENSG00000272647	TF binding region
ZNF655	TF binding region
ENSG00000228335	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000214314	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000241468	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000160908	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000221909	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1011024	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10238965	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10244158	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10254729	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10271049	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10271582	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1043466	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11976018	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13227795	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13240600	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13437771	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1980307	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2240384	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2272168	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2280600	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2280601	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2404324	0.84[EUR][1000 genomes]
rs3137	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34777615	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3779354	0.81[ASN][1000 genomes]
rs3843540	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3901286	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6962772	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7794682	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7794705	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7804551	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs883403	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs917154	0.82[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99150000-99154800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:99150000-99154800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:99150000-99154800	Weak transcription	Gastric	stomach
4	chr7:99150000-99154800	Weak transcription	Pancreas	Pancrea
5	chr7:99150000-99155200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:99150200-99154800	Weak transcription	Right Ventricle	heart
7	chr7:99150200-99154800	Weak transcription	Hela-S3	cervix
8	chr7:99150200-99155000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:99150200-99155000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:99150200-99155400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:99150200-99155400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:99150200-99155400	Weak transcription	Aorta	Aorta
13	chr7:99150200-99155400	Weak transcription	Ovary	ovary
14	chr7:99150400-99154600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:99150400-99154600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:99150400-99154600	Weak transcription	Fetal Heart	heart
17	chr7:99150400-99154800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:99150400-99154800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:99150400-99154800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:99150400-99154800	Weak transcription	Fetal Brain Male	brain
21	chr7:99150400-99154800	Weak transcription	Fetal Intestine Large	intestine
22	chr7:99150400-99154800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:99150400-99154800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:99150400-99154800	Weak transcription	Right Atrium	heart
25	chr7:99150400-99154800	Weak transcription	Small Intestine	intestine
26	chr7:99150400-99154800	Weak transcription	Stomach Mucosa	stomach
27	chr7:99150400-99154800	Weak transcription	HMEC	breast
28	chr7:99150400-99154800	Weak transcription	NH-A	brain
29	chr7:99150400-99155000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:99150400-99155200	Weak transcription	HUVEC	blood vessel
31	chr7:99150600-99154600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:99150600-99154600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:99150600-99154600	Weak transcription	HepG2	liver
34	chr7:99150600-99154600	Weak transcription	NHDF-Ad	bronchial
35	chr7:99150600-99154800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr7:99150600-99154800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:99150600-99154800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:99150600-99154800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:99150600-99154800	Weak transcription	Brain Angular Gyrus	brain
40	chr7:99150600-99154800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:99150600-99154800	Weak transcription	Osteobl	bone
42	chr7:99150600-99155000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:99150600-99155000	Weak transcription	Psoas Muscle	Psoas
44	chr7:99151000-99154800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:99151000-99154800	Strong transcription	Fetal Muscle Leg	muscle
46	chr7:99151000-99154800	Strong transcription	HSMM	muscle
47	chr7:99151000-99155000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:99151200-99154600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:99151200-99154600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr7:99151200-99154600	Genic enhancers	Dnd41	blood

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