Variant report

Variant	rs3901286
Chromosome Location	chr7:99107727-99107728
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99100700..99103626-chr7:99107423..99111491,3	K562	blood:
2	chr7:99102482..99104121-chr7:99107381..99108899,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196652	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1011024	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10238965	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10244158	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10253937	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10254729	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10271049	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10271582	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1043466	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11976018	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13227795	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13240600	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13437771	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980307	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2240384	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2272168	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280600	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2280601	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2404324	0.82[EUR][1000 genomes]
rs28457808	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3137	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34777615	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3779354	0.89[ASN][1000 genomes]
rs3843540	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60301933	0.86[ASN][1000 genomes]
rs61402640	0.84[ASN][1000 genomes]
rs61543997	0.84[ASN][1000 genomes]
rs6962772	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7794682	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7794705	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7804551	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs883403	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs917154	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99103800-99125600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:99104000-99108600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:99104000-99113000	Weak transcription	Aorta	Aorta
4	chr7:99104200-99108600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:99104200-99108600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:99104200-99109600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:99104200-99110000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:99104200-99110000	Weak transcription	Esophagus	oesophagus
9	chr7:99104200-99110000	Weak transcription	HSMMtube	muscle
10	chr7:99104200-99112600	Weak transcription	Small Intestine	intestine
11	chr7:99104200-99113600	Weak transcription	Pancreas	Pancrea
12	chr7:99104200-99114000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:99104200-99118600	Weak transcription	Right Atrium	heart
14	chr7:99104200-99123000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:99104600-99107800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:99104600-99109400	Weak transcription	Primary B cells from cord blood	blood
17	chr7:99104800-99109000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:99105000-99108400	Weak transcription	Primary T cells from cord blood	blood
19	chr7:99105000-99108400	Weak transcription	Brain Anterior Caudate	brain
20	chr7:99105000-99108400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:99105000-99108400	Weak transcription	Thymus	Thymus
22	chr7:99105000-99108600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:99105000-99108600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:99105000-99108600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:99105000-99108600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:99105000-99108600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:99105000-99108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:99105000-99108600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:99105000-99108600	Weak transcription	Brain Substantia Nigra	brain
30	chr7:99105000-99108600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:99105000-99108600	Weak transcription	A549	lung
32	chr7:99105000-99108600	Weak transcription	HepG2	liver
33	chr7:99105000-99108600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr7:99105000-99109400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:99105000-99109600	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:99105000-99109600	Weak transcription	Fetal Lung	lung
37	chr7:99105000-99109600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr7:99105000-99109800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:99105000-99109800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:99105000-99109800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:99105000-99109800	Weak transcription	HMEC	breast
42	chr7:99105000-99109800	Weak transcription	HSMM	muscle
43	chr7:99105000-99109800	Weak transcription	HUVEC	blood vessel
44	chr7:99105000-99109800	Weak transcription	NHEK	skin
45	chr7:99105000-99110000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr7:99105000-99110000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:99105000-99110000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:99105000-99110800	Weak transcription	Hela-S3	cervix
49	chr7:99105000-99111600	Weak transcription	NHDF-Ad	bronchial
50	chr7:99105000-99113600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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