Variant report

Variant	rs61543997
Chromosome Location	chr7:99133823-99133824
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99123099..99124928-chr7:99132151..99133961,2	MCF-7	breast:
2	chr7:99132310..99135851-chr7:99138488..99140065,3	K562	blood:
3	chr7:99132981..99135156-chr7:99152620..99155235,2	K562	blood:
4	chr7:99133649..99135851-chr7:99138488..99140065,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1002172	0.84[EUR][1000 genomes]
rs1004387	0.83[EUR][1000 genomes]
rs10225314	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10238965	0.84[ASN][1000 genomes]
rs10240199	0.87[ASN][1000 genomes]
rs10244158	0.81[ASN][1000 genomes]
rs10265385	0.93[ASN][1000 genomes]
rs10271582	0.83[ASN][1000 genomes]
rs1043466	0.81[ASN][1000 genomes]
rs10464604	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11539770	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11976018	0.86[ASN][1000 genomes]
rs12538826	0.89[ASN][1000 genomes]
rs13227795	0.81[ASN][1000 genomes]
rs13240600	0.81[ASN][1000 genomes]
rs13437771	0.81[ASN][1000 genomes]
rs17161677	1.00[EUR][1000 genomes]
rs17161698	1.00[EUR][1000 genomes]
rs17161766	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17161768	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17161769	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17161771	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17161772	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17161774	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161780	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161783	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1851427	0.92[EUR][1000 genomes]
rs1980307	0.81[ASN][1000 genomes]
rs1985453	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2057906	1.00[EUR][1000 genomes]
rs2107705	1.00[EUR][1000 genomes]
rs2240385	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2269985	1.00[EUR][1000 genomes]
rs2272168	0.84[ASN][1000 genomes]
rs2280600	0.81[ASN][1000 genomes]
rs2280601	0.81[ASN][1000 genomes]
rs2404322	1.00[EUR][1000 genomes]
rs3137	0.86[ASN][1000 genomes]
rs3764815	1.00[EUR][1000 genomes]
rs3800960	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3823812	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3843540	0.86[ASN][1000 genomes]
rs3901286	0.84[ASN][1000 genomes]
rs45442295	0.92[EUR][1000 genomes]
rs45492098	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs45540134	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs45600842	0.92[EUR][1000 genomes]
rs45622743	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4646446	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646447	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646449	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646453	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646456	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58024720	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58222677	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59986060	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60301933	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60865030	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61159815	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61337492	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61402640	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962772	0.81[ASN][1000 genomes]
rs72494451	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72494452	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72494453	0.92[EUR][1000 genomes]
rs72494454	0.92[EUR][1000 genomes]
rs73709637	1.00[EUR][1000 genomes]
rs73709641	1.00[EUR][1000 genomes]
rs7804551	0.86[ASN][1000 genomes]
rs940336	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99130200-99138200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:99130200-99138200	Weak transcription	Hela-S3	cervix
3	chr7:99130800-99135800	Weak transcription	Primary T cells from cord blood	blood
4	chr7:99131400-99134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:99131400-99137000	Weak transcription	HepG2	liver
6	chr7:99131400-99138200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:99131600-99137000	Weak transcription	K562	blood
8	chr7:99131600-99138000	Weak transcription	Brain Substantia Nigra	brain
9	chr7:99131600-99138200	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:99131600-99138200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:99131600-99138200	Weak transcription	Left Ventricle	heart
12	chr7:99131600-99138200	Weak transcription	Ovary	ovary
13	chr7:99131600-99138200	Weak transcription	HSMMtube	muscle
14	chr7:99131600-99140600	Weak transcription	Right Ventricle	heart
15	chr7:99131800-99135400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:99131800-99136000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:99131800-99137000	Weak transcription	NH-A	brain
18	chr7:99131800-99144000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:99132000-99134800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:99132200-99135000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:99132600-99140800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:99132600-99148600	Weak transcription	Brain Angular Gyrus	brain
23	chr7:99132800-99138000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:99132800-99138000	Weak transcription	Brain Anterior Caudate	brain
25	chr7:99132800-99138200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:99133000-99138000	Weak transcription	Fetal Brain Female	brain
27	chr7:99133200-99137200	Weak transcription	Brain Germinal Matrix	brain
28	chr7:99133800-99145000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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