Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:98905002..98907882-chr7:98909240..98911791,4	K562	blood:
2	chr7:98905081..98907223-chr7:98910121..98912158,2	MCF-7	breast:
3	chr7:98877977..98879856-chr7:98906028..98908082,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1004387	0.83[EUR][1000 genomes]
rs10267346	0.85[ASN][1000 genomes]
rs10464604	0.84[EUR][1000 genomes]
rs11539770	0.84[EUR][1000 genomes]
rs17161652	0.94[ASN][1000 genomes]
rs17161677	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17161698	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1985453	0.84[EUR][1000 genomes]
rs2057906	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2107705	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2240385	0.84[EUR][1000 genomes]
rs2269985	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2404322	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3764815	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs45492098	0.84[EUR][1000 genomes]
rs45540134	0.84[EUR][1000 genomes]
rs45622743	0.84[EUR][1000 genomes]
rs58222677	0.84[EUR][1000 genomes]
rs58421977	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58999322	0.97[ASN][1000 genomes]
rs59986060	0.84[EUR][1000 genomes]
rs61159815	0.84[EUR][1000 genomes]
rs61402640	0.84[EUR][1000 genomes]
rs61543997	0.84[EUR][1000 genomes]
rs73709637	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73709641	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs940336	0.84[EUR][1000 genomes]
rs9768020	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98874800-98906800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:98893200-98906600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:98899200-98907800	Weak transcription	Aorta	Aorta
4	chr7:98899400-98907000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:98899400-98907200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:98903800-98910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:98904000-98907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:98905800-98907200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:98906000-98906800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:98906000-98906800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:98906000-98906800	Enhancers	HMEC	breast
12	chr7:98906000-98906800	Enhancers	NHEK	skin
13	chr7:98906000-98907400	Enhancers	Stomach Mucosa	stomach
14	chr7:98906200-98906800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:98906200-98907800	Weak transcription	A549	lung
16	chr7:98906200-98908000	Weak transcription	Brain Hippocampus Middle	brain
17	chr7:98906400-98910200	Weak transcription	Brain Cingulate Gyrus	brain

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