Variant report

Variant	rs61159815
Chromosome Location	chr7:99094497-99094498
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99092318..99094563-chr7:99094696..99097650,2	K562	blood:
2	chr7:99082773..99088647-chr7:99089038..99094596,7	MCF-7	breast:
3	chr7:99093125..99095792-chr7:99099827..99103934,4	MCF-7	breast:
4	chr7:99068931..99071829-chr7:99093841..99095916,3	K562	blood:

Variant related genes	Relation type
ENSG00000160908	Chromatin interaction
ENSG00000198556	Chromatin interaction
ENSG00000196652	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1002172	0.84[EUR][1000 genomes]
rs1004387	0.83[EUR][1000 genomes]
rs10225314	0.84[EUR][1000 genomes]
rs10240199	0.83[ASN][1000 genomes]
rs10244158	0.86[ASN][1000 genomes]
rs10265385	0.88[ASN][1000 genomes]
rs10271049	0.81[ASN][1000 genomes]
rs1043466	0.85[ASN][1000 genomes]
rs10464604	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11539770	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11976018	0.82[ASN][1000 genomes]
rs12538826	0.93[ASN][1000 genomes]
rs13227795	0.85[ASN][1000 genomes]
rs13240600	0.85[ASN][1000 genomes]
rs13437771	0.85[ASN][1000 genomes]
rs17161652	0.92[EUR][1000 genomes]
rs17161677	1.00[EUR][1000 genomes]
rs17161698	1.00[EUR][1000 genomes]
rs17161766	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17161768	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17161769	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17161771	0.84[EUR][1000 genomes]
rs17161772	0.84[EUR][1000 genomes]
rs17161774	0.92[EUR][1000 genomes]
rs17161780	0.92[EUR][1000 genomes]
rs17161783	0.92[EUR][1000 genomes]
rs1851427	0.92[EUR][1000 genomes]
rs1980307	0.85[ASN][1000 genomes]
rs1985453	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2057906	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107705	1.00[EUR][1000 genomes]
rs2240384	0.81[ASN][1000 genomes]
rs2240385	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2269985	1.00[EUR][1000 genomes]
rs2272168	0.83[ASN][1000 genomes]
rs2280600	0.85[ASN][1000 genomes]
rs2280601	0.85[ASN][1000 genomes]
rs2404322	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3137	0.82[ASN][1000 genomes]
rs3764815	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3779354	0.84[ASN][1000 genomes]
rs3800960	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3823812	0.92[EUR][1000 genomes]
rs3843540	0.82[ASN][1000 genomes]
rs45442295	0.92[EUR][1000 genomes]
rs45492098	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs45540134	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs45600842	0.92[EUR][1000 genomes]
rs45622743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646446	0.92[EUR][1000 genomes]
rs4646447	0.92[EUR][1000 genomes]
rs4646449	0.92[EUR][1000 genomes]
rs4646453	0.92[EUR][1000 genomes]
rs4646456	0.92[EUR][1000 genomes]
rs58024720	0.84[EUR][1000 genomes]
rs58222677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58421977	1.00[EUR][1000 genomes]
rs59986060	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60301933	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60865030	0.92[EUR][1000 genomes]
rs61337492	0.92[EUR][1000 genomes]
rs61402640	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61543997	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6962772	0.86[ASN][1000 genomes]
rs72494451	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72494452	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72494453	0.92[EUR][1000 genomes]
rs72494454	0.92[EUR][1000 genomes]
rs73709637	1.00[EUR][1000 genomes]
rs73709641	1.00[EUR][1000 genomes]
rs7794682	0.81[ASN][1000 genomes]
rs7804551	0.81[ASN][1000 genomes]
rs883403	0.84[ASN][1000 genomes]
rs940336	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99071400-99096200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99089800-99094800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr7:99089800-99095400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:99090400-99094600	ZNF genes & repeats	GM12878-XiMat	blood
5	chr7:99090600-99094600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:99092000-99095200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:99092000-99095200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:99092000-99095400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:99092200-99094600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:99092200-99095200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:99092200-99095200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:99092200-99095200	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:99092200-99095200	Strong transcription	Stomach Smooth Muscle	stomach
14	chr7:99092200-99095200	Weak transcription	Hela-S3	cervix
15	chr7:99092200-99095200	Weak transcription	HUVEC	blood vessel
16	chr7:99092200-99095400	Weak transcription	Fetal Heart	heart
17	chr7:99092200-99095400	Weak transcription	HepG2	liver
18	chr7:99092200-99095600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:99092200-99095600	Weak transcription	Fetal Brain Male	brain
20	chr7:99092200-99095600	Weak transcription	Fetal Kidney	kidney
21	chr7:99092200-99095800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:99092200-99095800	Weak transcription	Right Atrium	heart
23	chr7:99092200-99096200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:99092200-99096200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:99092400-99095000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:99092400-99095000	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr7:99092400-99095200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:99092400-99095200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr7:99092400-99095200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:99092400-99095200	Weak transcription	Brain Anterior Caudate	brain
31	chr7:99092400-99095200	Strong transcription	Ovary	ovary
32	chr7:99092400-99095200	Weak transcription	Psoas Muscle	Psoas
33	chr7:99092400-99095200	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr7:99092400-99095200	Weak transcription	Small Intestine	intestine
35	chr7:99092400-99095200	Weak transcription	NHEK	skin
36	chr7:99092400-99095400	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:99092400-99095400	Weak transcription	NHDF-Ad	bronchial
38	chr7:99092400-99095600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr7:99092400-99095600	Strong transcription	Fetal Lung	lung
40	chr7:99092400-99095600	Weak transcription	HSMMtube	muscle
41	chr7:99092400-99096200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr7:99092600-99095200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:99092600-99095200	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:99092600-99095200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:99092600-99095200	Weak transcription	Brain Hippocampus Middle	brain
46	chr7:99092600-99095200	Weak transcription	Brain Substantia Nigra	brain
47	chr7:99092600-99095200	Weak transcription	Stomach Mucosa	stomach
48	chr7:99092600-99095600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:99092600-99095600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr7:99092600-99095600	Weak transcription	NH-A	brain

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